User: simo.aufiero

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Posts by simo.aufiero

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Answer: A: MapSplice Error: filter alignment failed
... Hi Spin, this is the command line that I used to perfom the analysis: python mapsplice.py -p 16 --bam -o mapsplice_out001 -c Chromosomes -x BowtieIndex/genome -1 paired-001.R1.fastq -2 paired-001.R2.fastq --gene-gtf gencode.vM16.annotation.gtf --fusion-non-canonical --filtering 1 --min-map-len 25 - ...
written 10 months ago by simo.aufiero0
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Answer: A: MapSplice Error: filter alignment failed
... Hi Guanghao Li, I had the same problem. I am running mapsplice using the genome reference mm10. I did the analysis in the past by using mm9 and mapsplice pipeline finished without any problem with that genome reference. What genome reference are you using? Simona ...
written 11 months ago by simo.aufiero0

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