User: Bert Overduin
Bert Overduin • 3.7k
- Reputation:
- 3,680
- Status:
- Trusted
- Location:
- Edinburgh Genomics, The University of Edinburgh
- Website:
- https://genomics.ed.ac...
- Last seen:
- 3 years ago
- Joined:
- 9 years, 7 months ago
- Email:
- b********@gmail.com
I am a wet lab biologist turned IT consultant turned bioinformatician. After working for 9 years at the European Bioinformatics Institute (EBI) as Helpdesk & Outreach Officer within the Ensembl group, I started on 1 May 2014 at Edinburgh Genomics, where I am responsible for organising bioinformatics training and outreach.
Posts by Bert Overduin
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... Dear all,
In September we are again offering one of our most popular workshops, i.e. the 5-day Introduction to Python for Biologists. As this workshop starts completely from scratch it is especially suited to those with little or no previous programming experience.
The workshop is taught by Marti ...
written 3.3 years ago by
Bert Overduin • 3.7k
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5 follow
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... Dear all,
I am happy to announce that for the third year in a row we have been able to get three members of the GATK team of the Broad Institute (https://software.broadinstitute.org/gatk/) over to Edinburgh for a few days to teach a workshop on GATK Best Practices for Variant Discovery.
Details of ...
written 3.6 years ago by
Bert Overduin • 3.7k
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... [Edinburgh Genomics][1] (part of [The University of Edinburgh][2]) offers a comprehensive range of Python programming workshops. All of these are taught by Dr. Martin Jones, founder of [Python for Biologists][3] and writer of several [Python books][4].
**[Introduction to Python for Biologists][5]* ...
written 4.1 years ago by
Bert Overduin • 3.7k
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... We are currently accepting applications for our 1-day workshop "Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications".
This workshop is aimed at anyone who is working, or planning to work, with Oxford Nanopore MinION sequence data.
The workshop consists of presentations, de ...
written 4.1 years ago by
Bert Overduin • 3.7k
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... We still have some places left on our [Data Manipulation and Visualisation with Python][1] workshop, which runs from 5-9 September 2016 in Edinburgh. This course, taught by dr Martin Jones, founder of [Python for Biologists][2] and writer of several Python books, focuses on tools like Pandas, matpl ...
written 4.2 years ago by
Bert Overduin • 3.7k
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... In August we will offer two 5-day Python courses at Edinburgh Genomics. Both courses will be taught by dr Martin Jones, lecturer in bioinformatics at The University of Edinburgh and writer of several Python books (http://pythonforbiologists.com/index.php/introduction-to-python-for-biologists/).
The ...
written 5.4 years ago by
Bert Overduin • 3.7k
1
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1.2k
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News:
Announcement: Workshop GATK Best Practices for Variant Discovery, 20-21 April 2015, Edinburgh, UK
... I am happy to announce that we have been able to get three members of the Broad Institute's GATK (Genome Analysis Toolkit) team over to Edinburgh to teach a 2-day workshop on "GATK Best Practices for Variant Discovery" on Monday 20 and Tuesday 21 April 2015.
More information about this workshop (in ...
written 5.7 years ago by
Bert Overduin • 3.7k
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... Hi,
There are many tools that can do this, but my favourite is the Ensembl Variant Effect Predictor (VEP).
Bert
...
written 5.9 years ago by
Bert Overduin • 3.7k
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1.6k
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... This seems unnecessary complicated to me. Shouldn't Annovar tell you what the protein change caused by your variant is? What exactly is the information you have and what is the information you want?
...
written 6.0 years ago by
Bert Overduin • 3.7k
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Comment:
C: Missing gene symbols in biomart
... From Ensembl.
...
written 6.0 years ago by
Bert Overduin • 3.7k
Latest awards to Bert Overduin
Commentator
3.2 years ago,
created a comment with at least 3 up-votes.
For C: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
Commentator
3.2 years ago,
created a comment with at least 3 up-votes.
For C: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
Teacher
3.3 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Scholar
3.5 years ago,
created an answer that has been accepted.
For A: Counting the number of paralogs in various species
Popular Question
3.6 years ago,
created a question with more than 1,000 views.
For Introduction to Python for Biologists and Advanced Python for Biologists courses
Popular Question
3.6 years ago,
created a question with more than 1,000 views.
For Introduction to Python for Biologists and Advanced Python for Biologists courses
Teacher
5.3 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Good Answer
5.3 years ago,
created an answer that was upvoted at least 5 times.
For A: Orthologus Genes
Scholar
6.2 years ago,
created an answer that has been accepted.
For A: Counting the number of paralogs in various species
Teacher
6.2 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Scholar
6.2 years ago,
created an answer that has been accepted.
For A: Counting the number of paralogs in various species
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Scholar
6.3 years ago,
created an answer that has been accepted.
For A: Counting the number of paralogs in various species
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Teacher
6.3 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
Scholar
6.3 years ago,
created an answer that has been accepted.
For A: Counting the number of paralogs in various species
Scholar
6.4 years ago,
created an answer that has been accepted.
For A: Counting the number of paralogs in various species
Teacher
6.4 years ago,
created an answer with at least 3 up-votes.
For A: Find Ion/Water Channel Related Genes
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