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Comment: C: Retrieving only ENST ids linked to an ENSG ids using the Ensembl REST API
9.8 years ago by Bert Overduin ★ 3.7k
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4.5k
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Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
1
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1
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4.5k
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Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
0
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1
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4.5k
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Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
3
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1
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2.4k
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Answer: Answer: too many non-synonymous SNPs
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
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3.3k
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Answer: A: How to scrape data from UCSC genome browser?
9.8 years ago by Bert Overduin ★ 3.7k
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3.9k
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Answer: Answer: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
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0
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6.4k
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Answer: Answer: What kind of distribution to you expect to see for RNA-Seq expression levels?
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
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3.9k
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Comment: C: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
9.8 years ago by Bert Overduin ★ 3.7k
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1
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5.3k
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Comment: Comment: Reference sequence and gtf annotation.
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
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1
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5.3k
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Answer: Answer: Reference sequence and gtf annotation.
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
4
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2
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4.4k
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Answer: Answer: Mapping genomic patches to chromosomes
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
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0
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4.7k
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Comment: C: Ensembl REST: How to retrieve CDS from a protein id?
9.8 years ago by Bert Overduin ★ 3.7k
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1
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3.2k
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Comment: C: Biomart, Phytozome and GO terms
9.8 years ago by Bert Overduin ★ 3.7k
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0
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3.2k
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Answer: A: Biomart, Phytozome and GO terms
9.8 years ago by Bert Overduin ★ 3.7k
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1
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1.7k
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Answer: Answer: Conversion of variant data
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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1
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4.7k
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Comment: C: Ensembl REST: How to retrieve CDS from a protein id?
9.8 years ago by Bert Overduin ★ 3.7k
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3.0k
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Comment: C: do you have any tools convert pdbid to accesion number of gene
9.8 years ago by Bert Overduin ★ 3.7k
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0
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4.0k
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Comment: Comment: snp analysis using a software tool
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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0
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4.0k
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Comment: Comment: snp analysis using a software tool
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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2
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4.0k
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Answer: Answer: snp analysis using a software tool
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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3.2k
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Comment: C: UCSC Table Browser: redundant CDS sequences in generated fasta
9.8 years ago by Bert Overduin ★ 3.7k
1
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1
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4.5k
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Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
0
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0
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2.5k
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Comment: Comment: Best method to retrieve genome sequences
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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1
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2.5k
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Comment: Comment: Best method to retrieve genome sequences
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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0
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36k
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Comment: Comment: Still confused about exons versus CDS
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
0
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1
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6.7k
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Answer: Answer: EC number assignment tools
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 3.7k
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0
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8.7k
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Comment: C: Identifying Chromosomal Position from Gene ID, Mutations, and their Locations
9.8 years ago by Bert Overduin ★ 3.7k
5
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1
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36k
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Answer: Answer: Still confused about exons versus CDS
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
1
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1
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4.5k
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Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
1
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0
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4.5k
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Comment: C: First Intron extraction from ensembl
9.8 years ago by Bert Overduin ★ 3.7k
1
vote
1
reply
4.5k
views
Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
1
vote
1
reply
4.5k
views
Comment: Comment: First Intron extraction from ensembl
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
0
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1
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6.3k
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Answer: Answer: dbSNP not using hg19?
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
5
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0
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2.2k
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Answer: Answer: Where can I find the wild type sequences?
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.7k
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0
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3.0k
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Comment: Comment: Working with 1000G data files
updated 2.5 years ago by 43k • written 9.9 years ago by ★ 3.7k
1
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0
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6.3k
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Answer: A: Comparing vcf with dbSNP
9.9 years ago by Bert Overduin ★ 3.7k
1
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0
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3.0k
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Comment: C: Working with 1000G data files
9.9 years ago by Bert Overduin ★ 3.7k
0
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0
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4.3k
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Comment: C: deletion in intron region, any consequences?
9.9 years ago by Bert Overduin ★ 3.7k
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1
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2.9k
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Comment: C: PAC to transcript_name
9.9 years ago by Bert Overduin ★ 3.7k
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0
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2.9k
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Comment: C: PAC to transcript_name
9.9 years ago by Bert Overduin ★ 3.7k
0
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1
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3.9k
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Comment: C: Parsing Protein Trees to determine orthologs and paralogs
9.9 years ago by Bert Overduin ★ 3.7k
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0
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21k
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Comment: C: How To Pronounce "De Bruijn"?
9.9 years ago by Bert Overduin ★ 3.7k
5
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1
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6.7k
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Comment: C: Standard Post Variant Call (Vcf) Analysis That Work Out Of The Box
10.5 years ago by Bert Overduin ★ 3.7k
0
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0
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3.9k
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Answer: A: Mitochondrial Genome Annotation Difference?
10.7 years ago by Bert Overduin ★ 3.7k
0
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0
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2.7k
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Comment: C: Variant Present In 1000 Genomes Data But Not In Esp
10.9 years ago by Bert Overduin ★ 3.7k
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0
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7.3k
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Comment: C: What Is A "Gene"? Redundancies In Refseq Versus Ensembl
11.0 years ago by Bert Overduin ★ 3.7k
0
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1
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2.8k
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Comment: C: Accessing 1000G/Hapmap Data
11.0 years ago by Bert Overduin ★ 3.7k
0
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1
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2.8k
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Comment: C: Accessing 1000G/Hapmap Data
11.0 years ago by Bert Overduin ★ 3.7k
4
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1
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2.8k
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Answer: A: Accessing 1000G/Hapmap Data
11.0 years ago by Bert Overduin ★ 3.7k
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