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questions
3
votes
1
reply
3.7k
views
Help understanding Deseq2 '~group' contrasts
RNA-Seq
Deseq2
DE
updated 3.9 years ago by
Biostar
20 • written 7.9 years ago by
mbio.kyle
▴ 380
1
vote
3
replies
2.6k
views
Help with Mitelman Database
fusion
database
mitelman
cancer
updated 5.3 years ago by
Alex
• 0 • written 8.1 years ago by
mbio.kyle
▴ 380
4
votes
8
replies
1.8k
views
Genome Browsers with BAM viewing capabilitites - Debian
bam
visulization
updated 7.9 years ago by
Biostar
20 • written 8.0 years ago by
mbio.kyle
▴ 380
0
votes
6
replies
5.4k
views
Tophat2 Reporting output tracks failed
alignment
software-error
tophat2
rna-seq
updated 24 months ago by
Ram
43k • written 9.2 years ago by
mbio.kyle
▴ 380
0
votes
1
reply
2.5k
views
Negative Zero Workaround in R for signed p-value sorting
R
statistics
updated 8.0 years ago by
fanli.gcb
▴ 730 • written 8.0 years ago by
mbio.kyle
▴ 380
1
vote
0
replies
3.4k
views
GSEA Prerank: Having Phenotype labels
gsea
RNA-Seq
prerank
8.1 years ago by
mbio.kyle
▴ 380
3
votes
2
replies
3.0k
views
Using io.StringIO() with biopython Phylo parse
python
biopython
phylogenetics
tree
newick
updated 21 months ago by
Ram
43k • written 8.2 years ago by
mbio.kyle
▴ 380
7
votes
8
replies
2.8k
views
Discrepency between number of reads tophat
RNA-Seq
tophat
software-error
updated 18 months ago by
Ram
43k • written 8.6 years ago by
mbio.kyle
▴ 380
6
votes
10
replies
4.2k
views
UCSC BedGraph Issue
bedgraph
kent
ucsc
methylation
updated 16 months ago by
Ram
43k • written 8.8 years ago by
mbio.kyle
▴ 380
3
votes
4
replies
5.4k
views
Cuffdiff: 0 expression and NOTEST
RNA-Seq
cuffdiff
updated 16 months ago by
Ram
43k • written 8.8 years ago by
mbio.kyle
▴ 380
0
votes
2
replies
2.5k
views
MEDIPS Crashing: "Error in 1:max_signal_index : argument of length 0"
R
bioconductor
software-error
MEDIPS
updated 16 months ago by
Ram
43k • written 8.8 years ago by
mbio.kyle
▴ 380
1
vote
4
replies
2.5k
views
Search for a "standard" PWM for Kozak Sequence
genome
motif
kozak
updated 14 months ago by
Ram
43k • written 9.5 years ago by
mbio.kyle
▴ 380
3
votes
2
replies
3.4k
views
Clustering RNA Seq - No Conditions, No Replicates
RNA
RNA-Seq
R
updated 23 months ago by
Ram
43k • written 9.1 years ago by
mbio.kyle
▴ 380
0
votes
1
reply
1.7k
views
Strange tophat2 results
RNA-Seq
tophat
bowtie
virus
updated 23 months ago by
Ram
43k • written 9.1 years ago by
mbio.kyle
▴ 380
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