User: lumramabaja

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lumramabaja10
Reputation:
10
Status:
New User
Location:
European Union
Last seen:
2 years, 9 months ago
Joined:
3 years, 7 months ago
Email:
l**********@gmail.com

Posts by lumramabaja

<prev • 3 results • page 1 of 1 • next >
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[Beginners question]: What determines the number at the end of a gene? (example: CTX-M-15, CTX-M-55, CTX-M-28)
... What do the numbers at the end of a gene stand for?  Do they represent the location, or something else? ...
gene gene annotation blast written 2.8 years ago by lumramabaja10 • updated 2.8 years ago by seidel6.5k
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Question about Exonerate output
... I am running a protein2genome allignment on exonerate, and this is the result I receive (vulgar format):   vulgar: protein2 0 626 . dna_1 1380 3258 + 3359 M 626 1878 >dna_1 (1380 - 3258) vulgar: protein1 0 485 . dna_2 1200 2908 + 2400 M 48 144 S 0 2 5 0 2 I 0 146 3 0 2 S 1 1 M 67 201 5 0 2 I ...
genome bioinformatics exonerate alignment protein written 3.4 years ago by lumramabaja10 • updated 2.7 years ago by Biostar ♦♦ 20
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Problems with Exonerate output
... I am a first year bioinformatics bachelor student and I am using exonerate for the first time, however I am facing some difficulties with its output. All I am receiving is  "-- completed exonerate analysis", without any error. The code I am using is: exonerate  --model protein2genome --showalignme ...
protein2genome exonerate alignment tool assembly written 3.6 years ago by lumramabaja10 • updated 3.3 years ago by Prakki Rama2.1k

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