User: BI

gravatar for BI
BI60
Reputation:
60
Status:
Trusted
Location:
India
Last seen:
2 years, 7 months ago
Joined:
3 years, 8 months ago
Email:
r************@gmail.com

Posts by BI

<prev • 9 results • page 1 of 1 • next >
0
votes
0
answers
747
views
0
answers
In silico interstitial deletion mutations in proteins
... How can one perform interstitial deletion mutations in silico in proteins. I tried using pymol but problem there is whenever I am removing a stretch of peptide, my protein gets defragmented. I am stuck. Any kind of help is really appreciated. Thank you ...
protein pymol in silico mutations written 2.6 years ago by BI60 • updated 2.5 years ago by Biostar ♦♦ 20
1
vote
0
answers
589
views
0
answers
Homolgous protein sequences from three proteomes
... How can we identify homologous protein sequences from three proteomes? I want to identify homologous sequences which are common in all three proteomes. Can it be done using ACT( Artemis Comparison Tool)? Thanks! ...
blast homologous protein sequences proteomes written 2.7 years ago by BI60
0
votes
2
answers
2.8k
views
2
answers
Answer: A: Problem with executing do_dssp in gromacs
... Thank you everyone . Finally my do_dssp is working. Problem was with the binary file 'dssp-2.0.4-linux-amd64' . Now I have installed 'dssp-2.0.4-linux-i386' and it is working fine. Cheers!! ...
written 3.3 years ago by BI60
5
votes
1
answer
1.5k
views
1
answer
Protein structure distorted after energy minimization using GROMACS
... I have generated one protein structure from phyre2 using intensive mode. I tried to energy minimize it using GROMACS but unfortunately the resulting structure is completely distorted.  Is there any way I can fix this problem? I appreciate your help on this.   ...
energy minimization written 3.3 years ago by BI60 • updated 3.3 years ago by venu5.3k
0
votes
2
answers
2.8k
views
2
answers
Problem with executing do_dssp in gromacs
... I am new to gromacs and using gromacs 4.6.5 and dssp-2.0.4. When I am running these commands: export DSSP=/usr/local/bin/dssp do_dssp -s md_0_1.tpr -f md_0_1_noPBC.xtc -o dssp.xvg -ver 2 I am getting this error: dssp cmd='/usr/local/bin/dssp -na dd31ZWbc ddI6at3a > /dev/null 2> /dev/null' R ...
do_dssp written 3.4 years ago by BI60
1
vote
0
answers
1.0k
views
0
answers
ab initio modeling reliability and protein-protein docking
... Hi. I have modeled one protein composed of peptide stretches from different proteins. I have used ab initio modeling to generate my model using phyre2 intensive search. How can I check the quality of my predicted model ( like some BI tools) and is it valid or not? And now I want to dock my generated ...
ab initio modeling and protein-protein docking written 3.4 years ago by BI60
0
votes
3
answers
2.7k
views
3
answers
Comment: C: BI Journals with at least 3-4 impact factor
... Thanks for the link. But I am really worried that they might reject my work because I don't have wet lab validation of my data. As when I went through the articles they have published, bioinformatics work with experimental validation . But I will give it a try. Thanks. ...
written 3.7 years ago by BI60
0
votes
3
answers
2.7k
views
3
answers
Comment: C: BI Journals with at least 3-4 impact factor
... Thanks Chirag. But the problem is we don't have funding. We need a journal with no publication charges. ...
written 3.7 years ago by BI60
14
votes
3
answers
2.7k
views
7 follow
3
answers
BI Journals with at least 3-4 impact factor
... I am looking for a journal with at least 3-4 impact factor for publishing data related to epitope mapping using bioinformatics algorithms. I have tried many good journals but all are asking for the validation of my results. I cannot go for the wet lab validation due to some unavoidable circumstances ...
epitope mapping written 3.7 years ago by BI60 • updated 2.7 years ago by Chirag Nepal2.1k

Latest awards to BI

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1715 users visited in the last hour