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0
votes
2
replies
826
views
Appropriate regression analysis for relationship of WGCNA modules with clinical traits
quantile linear WGCN polynominal eigengen
16 months ago by seta ★ 1.9k
2
votes
12
replies
3.7k
views
mergeCutHeight in WGCNA and correlation type for correct module identification
mergeCutHeight correlation WGCNA categorigal
16 months ago by seta ★ 1.9k
0
votes
0
replies
549
views
calculating genetic risk score using HLA DQ haplotypes
HLA PRS DQ haplotypes
20 months ago by seta ★ 1.9k
3
votes
5
replies
2.0k
views
ROC analysis, is this ROC curve usual?
AUC curve ROC
updated 2.6 years ago by 89k • written 2.6 years ago by ★ 1.9k
0
votes
0
replies
646
views
Blastn for converting the circular IDs
blastn microarray RNA circular-ID
2.9 years ago by seta ★ 1.9k
0
votes
0
replies
801
views
Converting Arraystar circular ID to circAtlas ID
circular ID conversion circAtlas Arraystar
3.0 years ago by seta ★ 1.9k
5
votes
6
replies
2.8k
views
Filtering bad quality probes in illumina microarray data
microarray illumina Kevin-Blighe GEO2R
3.0 years ago by seta ★ 1.9k
1
vote
0
replies
667
views
Calculating F statistics for SNP for association meta analysis
meta-analysis SNP association analysis F-statistics
3.1 years ago by seta ★ 1.9k
7
votes
5
replies
3.2k
views
what is the benefit of the de bruijn algorithm for short read assembly?
Assembly de Bruijn algorithm K-mer
updated 3.5 years ago by 56k • written 9.0 years ago by ★ 1.9k
0
votes
5
replies
5.5k
views
Error during Trinity running with the recent version?
next-gen Assembly RNA-Seq
updated 2.8 years ago by 45k • written 10.5 years ago by ★ 1.9k
2
votes
3
replies
1.6k
views
Batch effect in the single microarray dataset
gene-expression batch-effect PCA
updated 14 months ago by 45k • written 3.9 years ago by ★ 1.9k
1
vote
0
replies
1.4k
views
Survival analysis of TCGA data
survival analysis TCGA Regparallele WGCNA
3.9 years ago by seta ★ 1.9k
0
votes
1
reply
1.1k
views
Using simple t-test for selected genes of the microarray dataset
gene expression microarray t-test
3.9 years ago by seta ★ 1.9k
0
votes
0
replies
897
views
Weird PCA plot using WGCNA results
cancer PCA expression WGCNA plot
4.2 years ago by seta ★ 1.9k
1
vote
2
replies
3.1k
views
Module preservation analysis using WGCNA
cancer expression WGCNA samples gene
updated 4.2 years ago by 3.9k • written 4.2 years ago by ★ 1.9k
6
votes
7
replies
6.7k
views
Regarding finding hub genes using WGCNA
gene-expression hub-genes WGCNA
updated 4.2 years ago by 3.9k • written 4.2 years ago by ★ 1.9k
6
votes
13
replies
8.7k
views
9 follow
VCF file phasing by SHAPEIT
vcf phasing whole genome shapiet
updated 4.2 years ago by 2.9k • written 6.9 years ago by ★ 1.9k
0
votes
5
replies
2.0k
views
Considering the multiple test correction for the analysis of polygenic risk score association
association allele polygenic score Bonferroni
updated 4.3 years ago by ★ 3.0k • written 4.3 years ago by ★ 1.9k
1
vote
1
reply
1.2k
views
Network construction and analysis using WGCNA
meta-analysis WGCNA
updated 4.3 years ago by 3.9k • written 4.3 years ago by ★ 1.9k
2
votes
5
replies
3.2k
views
Visualizing the gene network obtained by WGCNA
WGCNA weighted network visualizing
4.4 years ago by seta ★ 1.9k
0
votes
2
replies
1.1k
views
Comparing two highly similar genomes
genome alignment
updated 2.4 years ago by 45k • written 4.4 years ago by ★ 1.9k
0
votes
2
replies
1.3k
views
Any text mining tool?
text-mining meta-analysis
4.5 years ago by seta ★ 1.9k
0
votes
1
reply
3.3k
views
Regarding valid transcript and Transdecoder output
sequencing Transdecoder transcript assembly
updated 4.6 years ago by ▴ 590 • written 9.5 years ago by ★ 1.9k
5
votes
7
replies
3.2k
views
RNA-seq power estimation using ssizeRNA program
power analysis RNA-seq ssizeRNA
updated 4.8 years ago by 89k • written 4.8 years ago by ★ 1.9k
14
votes
14
replies
14k
views
11 follow
How to extract fasta sequences from assembled transcripts generated by Stringtie
fasta gtf stringtie
updated 9 months ago by 9.3k • written 8.5 years ago by ★ 1.9k
0
votes
0
replies
998
views
The same effect of SNPs in LD?
GWAS linkage disequilibrium effect size
4.9 years ago by seta ★ 1.9k
0
votes
0
replies
1.5k
views
PLINK beta coefficient
GWAS association beta coefficient PLINK
5.0 years ago by seta ★ 1.9k
1
vote
0
replies
1.3k
views
Linear mixed model for genome-wide association analysis
linear mixed model GWAS GCTA
updated 5.0 years ago by 20 • written 5.1 years ago by ★ 1.9k
0
votes
2
replies
2.1k
views
GWAS results and linkage disequilibrium issue
GWAS linkage disequilibrium LD risk score
5.1 years ago by seta ★ 1.9k
2
votes
2
replies
1.7k
views
edgeR normalization via TMM method
RNA-Seq edgeR normalization TMM
updated 5.1 years ago by 90k • written 5.1 years ago by ★ 1.9k
5
votes
23
replies
3.8k
views
Please help with connecting the part of the header in a fasta file with another text file
programming fasta
updated 2.6 years ago by 45k • written 9.4 years ago by ★ 1.9k
27
votes
44
replies
20k
views
How to remove contamination from the transcriptome assembly
RNA-Seq contamination assembly blast Hiseq reads
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 1.9k
0
votes
5
replies
2.5k
views
Please help about java error of BBDuk
bbmap bbduk java brian bushnel
updated 4.6 years ago by 154k • written 5.2 years ago by ★ 1.9k
0
votes
5
replies
2.8k
views
Strange, FastQC doesn't work on windows, any suggestions?
Fastqc NGS
5.2 years ago by seta ★ 1.9k
0
votes
6
replies
2.4k
views
Microarray data normalization
RMA microarray normalization
updated 4.2 years ago by ▴ 80 • written 5.3 years ago by ★ 1.9k
0
votes
2
replies
1.2k
views
Linear mixed model and GWAS analysis
gwas linear mixed model longitudinal cohort
5.3 years ago by seta ★ 1.9k
0
votes
0
replies
811
views
Physical interaction of long non-coding RNAs with target genes
target genes physical interaction lncRNA
5.4 years ago by seta ★ 1.9k
0
votes
2
replies
1.2k
views
Validation of protein-coding gene and lncRNA correlation
RNA-Seq correlation non-coding RNA lncRNA
updated 5.4 years ago by ★ 1.9k • written 5.4 years ago by ★ 1.9k
0
votes
0
replies
749
views
The gene expression effect of eQTL variants in high LD
eQTL variants GTEx database gene expression effect
updated 5.5 years ago by 20 • written 5.6 years ago by ★ 1.9k
4
votes
5
replies
8.8k
views
Read trimming with BBDuk
bbduk read trimming bbmap
updated 5.5 years ago by 20 • written 8.5 years ago by ★ 1.9k
2
votes
2
replies
1.1k
views
Classification of long non-coding RNAs
lncRNA non-coding RNA
updated 5.5 years ago by 154k • written 5.5 years ago by ★ 1.9k
0
votes
2
replies
1.9k
views
long-non coding RNA and protein-coding genes correlation
lncRNA RNA-seq correlation co-expression
updated 5.5 years ago by 9.0k • written 5.5 years ago by ★ 1.9k
5
votes
7
replies
2.0k
views
lncRNA differential expression analysis
RNA-seq differential expression lncRNA
updated 3.2 years ago by 89k • written 5.6 years ago by ★ 1.9k
0
votes
3
replies
1.6k
views
DE lncRNA and mRNA correlation analysis
lncRNA correlation analysi mRNA
5.6 years ago by seta ★ 1.9k
3
votes
8
replies
2.1k
views
microRNA-seq analysis from RNA-seq data
rna-seq small rna microrna long non-coding rna
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by ★ 1.9k
0
votes
0
replies
884
views
Haplotype determination from a list of variants
haplotype SNP variant
5.6 years ago by seta ★ 1.9k
2
votes
3
replies
3.9k
views
Refseq proteins for several taxids
next-gen blast RNA-Seq
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.9k
5
votes
6
replies
6.7k
views
exact command for read normalization using trinity software
Assembly RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by ★ 1.9k
1
vote
1
reply
1.9k
views
Shortest path algorithm in pathway studio
pathway shortest path algorithm
updated 5.7 years ago by 20 • written 8.3 years ago by ★ 1.9k
0
votes
1
reply
1.8k
views
GCTA tool for case-control association analysis
GCTA case-control
updated 5.7 years ago by ▴ 940 • written 5.7 years ago by ★ 1.9k
294 results • Page 1 of 6
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