User: adam.maikai

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adam.maikai490
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Posts by adam.maikai

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
... Try [Oncotator][1] [1]: https://gatkforums.broadinstitute.org/gatk/discussion/4154/howto-install-and-run-oncotator-for-the-first-time ...
written 19 months ago by adam.maikai490 • updated 7 months ago by RamRS25k
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Answer: A: Filtering a VCF based on Map Quality
... Try [vcflib](https://github.com/ekg/vcflib): vcffilter -f "MQ > 30" in.vcf > out.vcf ...
written 4.1 years ago by adam.maikai490 • updated 18 days ago by RamRS25k
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Tool: MyGene.info clients: mygene.R and mygene.py
... MyGene.info is a gene query and annotation web service that provides the most up to date annotations available from several resources. This tool is especially  useful for ID conversion and retrieval of several annotations at once and supports every species from NCBI and Ensembl. Learn more about cap ...
R ngs annotation tool python written 5.1 years ago by adam.maikai490
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Answer: A: Gene Id Conversion Tool
... [MyGene.info][1] is a web service that provides up to date annotations in several fields and is great for gene ID conversion. All species from NCBI and Ensembl are supported and annotations are updated weekly to ensure the latest annotations are available. Both [python][2] and [R/Bioconductor][3] cl ...
written 5.1 years ago by adam.maikai490 • updated 3 months ago by RamRS25k
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Answer: A: How Do I Do Simple Go Term Lookup Given A Gene (Or Mrna) Identifier?
... Using MyGene.info's new R/Bioconductor package *mygene*, this can be done simply with the query() function. library(mygene) res<-query('NM_030621', fields='go', species='human')$hits lapply(res, as.list) This returns a data.frame for CC, MF, and BP, matching score, and the gene id. ...
written 5.1 years ago by adam.maikai490 • updated 15 months ago by RamRS25k

Latest awards to adam.maikai

Popular Question 2.2 years ago, created a question with more than 1,000 views. For MyGene.info clients: mygene.R and mygene.py
Appreciated 5.0 years ago, created a post with more than 5 votes. For A: Gene Id Conversion Tool
Good Answer 5.0 years ago, created an answer that was upvoted at least 5 times. For A: Gene Id Conversion Tool
Appreciated 5.1 years ago, created a post with more than 5 votes. For A: Gene Id Conversion Tool
Teacher 5.1 years ago, created an answer with at least 3 up-votes. For A: Gene Id Conversion Tool
Appreciated 5.1 years ago, created a post with more than 5 votes. For A: Gene Id Conversion Tool
Good Answer 5.1 years ago, created an answer that was upvoted at least 5 times. For A: Gene Id Conversion Tool
Teacher 5.1 years ago, created an answer with at least 3 up-votes. For A: Gene Id Conversion Tool

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