User: a.b.versteeg

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Posts by a.b.versteeg

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RNA-seq + metabolomics paired dataset
... Hi, I would very much appreciate it if somebody could point me to a public dataset which pairs both transcriptome (preferably RNA-seq) and metabolome data for a single organism (e.g. yeast or E.Coli). The number of samples is not very important. Thank you in advance. ...
metabolomics dataset transcriptomic written 4.2 years ago by a.b.versteeg0 • updated 3.1 years ago by raghavsehgal19950
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NUCmer --nosimplify (shadowed clusters)
... Hi, NUCmer has a function turned on by default, called the "simplify" function. The manual supplied explanation is not very clear to me: --[no]simplify Simplify alignments by removing shadowed clusters. Turn this option off if aligning a sequence to itself to look for repeats (default --simplify) ...
alignment nucmer shadowed clusters written 6.3 years ago by a.b.versteeg0
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MegaBLAST vs NUCmer
... Hi, For a project I'm trying to find out which aligner is best for aligning whole bacterial genomes. Important aspects for choosing the best aligner are speed and sensitivity. In this situation NUCmer and BLAST seem both great programs for making the local alignments. To find out which suits best, ...
genome alignment blast written 6.3 years ago by a.b.versteeg0

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