User: mjoyraj

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mjoyraj50
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Taiwan
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11 months, 1 week ago
Joined:
4 years, 5 months ago
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Posts by mjoyraj

<prev • 76 results • page 1 of 8 • next >
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Comment: C: How to set up a server for NGS analysis
... It's fine. You can close. ...
written 11 months ago by mjoyraj50
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Comment: C: How to set up a server for NGS analysis
... It is tough for me to get help from a system admin. I wonder if someone here has such experience. ...
written 11 months ago by mjoyraj50
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(Closed) How to set up a server for NGS analysis
... Hi all, I am a Biologist and I work with NGS data's. Previously I used to connect to a server using Putty where I have to give IP address, Port, Login id, and password and the connection type is SSH. Now I brought a server and it already have Windows 10. My plan is to do partition and also install L ...
software error written 11 months ago by mjoyraj50
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Comment: C: Labelling heatmap dendrogram
... Thanks for your suggestions. ...
written 3.0 years ago by mjoyraj50
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Comment: C: Labelling heatmap dendrogram
... I did it in another way, which may be partially okay. For example, I know I have 47 clusters, I choose to specify the color of the clusters rather than using the default color like this: install.packages("plyr") library(plyr) new_colors <- revalue(as.character(clusters_name), c("1"="yellow4", ...
written 3.0 years ago by mjoyraj50
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Labelling heatmap dendrogram
... Hi, can somebody help me fix this problem. I have gene expression data of 2314 genes for 15 conditions (alpha6; normalized and log2 transformed). I did hierarchical clustering of the genes based on expression and extracted clusters with the following scripts: hc <- hclust(dist(alpha6)) pdf("te ...
R rna-seq written 3.0 years ago by mjoyraj50 • updated 3.0 years ago by ivivek_ngs4.8k
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Comment: C: Tracing evolution of duplicated genes
... Yes, I do not want to disclose the gene-set on which I am working. ...
written 3.1 years ago by mjoyraj50
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Tracing evolution of duplicated genes
... I am working with a duplicated set of genes. The duplicated genes can be divided into three sub-families, let's say A, B, and C. A and B sub-families are ancestral and have multiple genes located as tandem array in chr25, C is another sub-family located in chr7. It is clear that C evolved from A or ...
gene evolution duplication written 3.1 years ago by mjoyraj50 • updated 3.1 years ago by Biostar ♦♦ 20
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Comment: C: How to annotate coding and long non-coding RNA together using transcriptome data
... Thanks, I already read some literature and I found this is the usual approach. Although we may miss some because some of the lncRNA are anti-sense to coding sequence. ...
written 3.6 years ago by mjoyraj50
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Comment: C: How to annotate coding and long non-coding RNA together using transcriptome data
... Thanks for your suggestion. As I searched in the literature, I found nothing is known about the lncRNA of my species of interest as well as any close relative of it.  So my plan is  to predict the putative lncRNA. I will use Cufflinks RABT assembly approach to assemble the known as well as novel tr ...
written 3.6 years ago by mjoyraj50

Latest awards to mjoyraj

Great Question 3.0 years ago, created a question with more than 5,000 views. For Filtering gene expression correlation matrix in R
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Cufflinks: Why in the skipped gtf file showed a portion of genome masked
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Cufflinks run showing “Multihit not found”
Popular Question 3.0 years ago, created a question with more than 1,000 views. For How to replace a set of sequence ID's with another set of sequence ID's ??
Popular Question 3.0 years ago, created a question with more than 1,000 views. For How transform FPKM values to Z-score using R
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Filtering gene expression correlation matrix in R
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Cufflinks: Long time for assembly-"Waiting for 1 thread to complete"
Popular Question 3.0 years ago, created a question with more than 1,000 views. For How to use --max-bundle-frags option of cufflinks in Galaxy..??
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Gene co-expression analysis
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Filtering gene expression correlation matrix in R
Popular Question 3.9 years ago, created a question with more than 1,000 views. For Filtering gene expression correlation matrix in R

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