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0
votes
0
replies
413
views
Manta SV (specially Translocation)
manta Structural-Variant
updated 7 months ago by 45k • written 7 months ago by ▴ 50
0
votes
0
replies
355
views
Variant Calling Issue
SV SNV
updated 10 months ago by 154k • written 10 months ago by ▴ 50
0
votes
1
reply
680
views
#Bismark Methylation mapping Error
Bismark0.24 Multicore Methylation
updated 21 months ago by 154k • written 21 months ago by ▴ 50
0
votes
0
replies
646
views
Density plot for Quantile and Quartile normalization in geomx workflow
GeoMX workflow
2.2 years ago by Nai ▴ 50
0
votes
2
replies
1.4k
views
GEOMX SPATIAL TRANSCRIPTOMICs
NGS transcriptomics ncounter GEOMX
2.6 years ago by Nai ▴ 50
0
votes
0
replies
555
views
Haploview Error
plink Haploview vep
2.6 years ago by Nai ▴ 50
0
votes
0
replies
702
views
Haploview linkage format .ped and .info file error
plink Haploview vcftools
updated 2.4 years ago by 45k • written 2.6 years ago by ▴ 50
0
votes
0
replies
587
views
File has zero value indivuals
Haploview
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 50
0
votes
2
replies
1.4k
views
logFC is negative, need help to get it done
Limma R
updated 2.7 years ago by 22k • written 2.7 years ago by ▴ 50
0
votes
3
replies
1.3k
views
Third quartile normalized logFC data to find differentially express gene using limma
Limma R
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by ▴ 50
0
votes
2
replies
1.0k
views
Design matrix in limma
Limma R
2.7 years ago by Nai ▴ 50
0
votes
6
replies
1.9k
views
Differentially gene expression analysis
Limma Deseq R
updated 2.8 years ago by ▴ 40 • written 2.8 years ago by ▴ 50
0
votes
0
replies
1.6k
views
Add column in Obs. in anndata using scanpy
scanpy
2.8 years ago by Nai ▴ 50
9
votes
4
replies
2.2k
views
Easiest way to design Bioinformatics pipeline
snakeflow python Nextflow
updated 2.9 years ago by 90k • written 2.9 years ago by ▴ 50
0
votes
4
replies
1.4k
views
Association of allele in population
Plink
2.9 years ago by Nai ▴ 50
2
votes
4
replies
2.5k
views
VEP annotated vcf is not readable in bcftools
bcftools Plink
updated 2.4 years ago by 45k • written 2.9 years ago by ▴ 50
1
vote
9
replies
4.0k
views
VEP annotated VCF conversion into TSV/Text
R bcftools VEP VCF
updated 2.9 years ago by ▴ 100 • written 3.0 years ago by ▴ 50
1
vote
2
replies
1.4k
views
VEP generated VCF file filtering using gnamAD, CADD , dbNSF etc with out loosing sample specific variants.
bcftools vep R VCF
updated 2.7 years ago by 45k • written 3.0 years ago by ▴ 50
2
votes
6
replies
4.0k
views
GeoMX NGS RNASeq data analysis
NGS RNA-Seq GeoMX
updated 3.0 years ago by 45k • written 3.1 years ago by ▴ 50
0
votes
3
replies
1.7k
views
Hardy-Weinberg equilibrium analysis in Plink for association study.
Plink association study
updated 3.3 years ago by • 0 • written 3.4 years ago by ▴ 50
0
votes
1
reply
883
views
SPSS : Descriptive analysis cross tabs error
crosstabs SPSS descriptive analysis
updated 3.3 years ago by ★ 30k • written 3.3 years ago by ▴ 50
0
votes
0
replies
659
views
SPSS statistics Analysis
quantitative SPSS variable Marker analysis Genotype Clinical
3.3 years ago by Nai ▴ 50
2
votes
4
replies
1.5k
views
PLINK CASE-CONTROL ANALYSIS
PLINK
3.4 years ago by Nai ▴ 50
4
votes
5
replies
5.7k
views
Pandas issue: To write multiple csv in loop
Pandas Python R
3.4 years ago by Nai ▴ 50
0
votes
0
replies
598
views
Expression and splicing QTL
eqtl MATRIXEQTL
updated 2.7 years ago by 45k • written 3.6 years ago by ▴ 50
0
votes
0
replies
559
views
miRNA prediction using mRNA bam files
miRNA BAM
updated 2.6 years ago by 45k • written 3.7 years ago by ▴ 50
0
votes
0
replies
781
views
EQTL visualization
list EQTL plot
3.7 years ago by Nai ▴ 50
0
votes
0
replies
629
views
criteria for pvOutputThreshold = 1e-100 in EQTLMATRIX and creation of geneloc.txt for ciseQTL
eQTL
updated 2.4 years ago by 45k • written 3.8 years ago by ▴ 50
1
vote
4
replies
2.5k
views
Bacterial genoem annotation online tools
Bacterial genome
3.8 years ago by Nai ▴ 50
0
votes
1
reply
928
views
Assign RSID to ID . / blank column in vcf file
ID VCF
updated 2.6 years ago by 45k • written 3.8 years ago by ▴ 50
0
votes
0
replies
560
views
MATRIXEQTL: Error during load SNPMATRIX.txt in MATRIXEQTL
data MATRIXEQTL dims SNPMATRIX.txt
updated 3.8 years ago by 154k • written 3.8 years ago by ▴ 50
1
vote
4
replies
1.5k
views
Help needed
bioalcidae
updated 2.7 years ago by 45k • written 3.8 years ago by ▴ 50
0
votes
7
replies
2.1k
views
SNPid or chromosomal number and position in vcf
VCF SNP
3.8 years ago by Nai ▴ 50
0
votes
13
replies
4.1k
views
eQTL Analysis
and expression genotypic gene data SNP
3.8 years ago by Nai ▴ 50
0
votes
0
replies
667
views
EQTL MATRIX _EQTL
GE SNP EQTL
updated 2.7 years ago by 45k • written 3.8 years ago by ▴ 50
2
votes
4
replies
1.4k
views
Learning how to create a pipeline in python
snakemake Python
updated 4.0 years ago by ★ 2.1k • written 4.0 years ago by ▴ 50
0
votes
2
replies
1.2k
views
Heatmap for large significant data
pvalue data Heatmap large
4.0 years ago by Nai ▴ 50
0
votes
2
replies
1.1k
views
vcf file indiviual column interpretation
vcf rsid
updated 2.6 years ago by 45k • written 4.1 years ago by ▴ 50
0
votes
0
replies
715
views
Fetch rsid and related genotype/sample from vcf file
vcf rsid
updated 2.6 years ago by 45k • written 4.1 years ago by ▴ 50
0
votes
1
reply
1.1k
views
eQTL Analysis
prediction eQTL or identification analysis
updated 4.1 years ago by 22k • written 4.1 years ago by ▴ 50
0
votes
0
replies
851
views
TPM/FPKM value from HTSeq count
value FPKM TPM
4.1 years ago by Nai ▴ 50
0
votes
4
replies
2.1k
views
VCF file
and VCF haploview
4.1 years ago by Nai ▴ 50
0
votes
3
replies
2.1k
views
Removal of multiple samples from vcf file
VCFtools
4.1 years ago by Nai ▴ 50
0
votes
13
replies
4.6k
views
Haploview and plink
Plink Haploview and
4.1 years ago by Nai ▴ 50
0
votes
10
replies
3.0k
views
TPM value from DESE2 and significant filterig isssue
DESE2 TPM value from
4.1 years ago by Nai ▴ 50
1
vote
11
replies
3.6k
views
desEQ2 eRROR
featurecount NA DESeq2 values
4.1 years ago by Nai ▴ 50
0
votes
3
replies
1.5k
views
HTseq header
count Htseq matrix
updated 4.2 years ago by 21k • written 4.2 years ago by ▴ 50
0
votes
1
reply
1.0k
views
EQTL analysis
sQTL eQTL and
updated 4.2 years ago by ★ 3.3k • written 4.2 years ago by ▴ 50
3
votes
18
replies
5.1k
views
Help creating Deseq2 count matrix from separate files
or Sample matrix
updated 4.3 years ago by 45k • written 4.4 years ago by ▴ 50
2
votes
3
replies
6.1k
views
R ---issues. on server. BiocManager", "genefilter"
BiocManager genefilter
updated 4.4 years ago by ★ 4.8k • written 4.4 years ago by ▴ 50
52 results • Page 1 of 2
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