User: gorilla.in.a.tie

Reputation:
20
Status:
New User
Location:
United Kingdom
Last seen:
3 months, 3 weeks ago
Joined:
4 years, 3 months ago
Email:
g***************@gmail.com

Posts by gorilla.in.a.tie

<prev • 4 results • page 1 of 1 • next >
1
vote
1
answer
210
views
1
answers
Comment: C: Strange reference allele convention
... Agree with you both, but have accepted this answer as it confirmed my suspicion about what was going on ...
written 4 months ago by gorilla.in.a.tie20
9
votes
1
answer
210
views
1
answer
Strange reference allele convention
... Hey all, I downloaded the accompanying snps from the paper: **[Genome-wide identification of splicing QTLs in the human brain and their enrichment among schizophrenia-associated loci][1]** Atsushi Takata, Naomichi Matsumoto & Tadafumi Kato but found some strange alignment to the reference g ...
alignment snp written 4 months ago by gorilla.in.a.tie20 • updated 4 months ago by Kevin Blighe37k
0
votes
1
answer
1.9k
views
1
answers
Comment: C: Gap penalty in smith waterman
... So what you are saying is that it is necessary to calculate gap penalty for a given base matching, and use replacement base context? Do you have a sense of how people are generally coming up with the substitution matrices for smith waterman dna local alignment experiments - it seems to be mostly jus ...
written 4.3 years ago by gorilla.in.a.tie20
2
votes
1
answer
1.9k
views
1
answer
Gap penalty in smith waterman
... Hi all,   I am looking for advice on how to calculate the gap and affine gap extension penalties that are used in the dynamic programming approaches to sequence alignment. I understand that the substitution matrices are simple lod scores, but always see somewhat hand wavy justifications of gap pen ...
sequence alignment written 4.3 years ago by gorilla.in.a.tie20 • updated 4.3 years ago by Istvan Albert ♦♦ 79k

Latest awards to gorilla.in.a.tie

Popular Question 4.2 years ago, created a question with more than 1,000 views. For Gap penalty in smith waterman

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 693 users visited in the last hour