User: Miao Yu

gravatar for Miao Yu
Miao Yu80
Reputation:
80
Status:
New User
Location:
China
Last seen:
4 years, 10 months ago
Joined:
5 years, 1 month ago
Email:
8********@qq.com

Posts by Miao Yu

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Survival Analysis Using Tcga Data
... It's easy to fetch those data with R. TCGA-Assembler is a very good tool for you to get those data easily. On the assumption that you are familar with R. First, download this tools, and unpackage it. Second,source("Model_A.R") Third, excute the next sentence. DownloadClinicalData(traverseRes ...
written 4.9 years ago by Miao Yu80
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Comment: C: survival analysis of TCGA data
... you mean he should add the 'days_to_last_follow_up' to the current dataset as censored data(status is '0')? ...
written 4.9 years ago by Miao Yu80
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Comment: C: The variance gene for normal people as the control set compared with TCGA gene m
... It is very nice for you to answer my question so specific. I think my work should be related with the first one. After reading your answer, I still have two questions about it. 1. According to your answer, the mutations seen in both tumor and matched normal samples are usally germline, so I wonder ...
written 5.1 years ago by Miao Yu80
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Comment: C: The variance gene for normal people as the control set compared with TCGA gene m
... Thanks for your reply Sean Davis. I check the dbGaP and the link list provided by you, however nothing did I get :( . maybe because I'm novice ... Those databases all provide the interface of gene ID, chromosomal location, dbSNP rs ID, or cancer type, instead of the normal people variation. Althou ...
written 5.1 years ago by Miao Yu80
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Comment: C: TCGA: Does TCGA cancer studies have mRNA expression data for Control/Normal samp
... hi, komal.rathi, if I want analysis the TCGA data talked above for a differential expression test(for paired data), whether the quantity of TN set is too small compared with the NT set for a certain cancer type? Which might lead a deviation to the result.  Maybe it would be better, if I using the R ...
written 5.1 years ago by Miao Yu80
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The variance gene for normal people as the control set compared with TCGA gene mutations for a certain cancer type
... Hi everyone, I want to analysis the mutation genes in Pan-TCGA, provided in Mutational landscape and significance across 12 major cancer types. For a better understand the analysis the mutation genes in the certain cancer type, so I want to know where could I get the control set data compared with ...
gene variance control set tcga mutation written 5.1 years ago by Miao Yu80 • updated 5.1 years ago by Cyriac Kandoth5.4k

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