User: abujamel.t

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abujamel.t0
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Posts by abujamel.t

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Comment: C: kmergenie generates histo files but no histograms!
... Hi Rayan, it worked! it generated the graphs from the histo files. So what do you think the issue is? TJ ...
written 3.0 years ago by abujamel.t0
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Comment: C: kmergenie generates histo files but no histograms!
... This is the output of "make check" scripts/test_install Testing presence of specialk.... OK Testing presence of Rscript.... R scripting front-end version 3.1.2 (2014-10-31) OK Testing basic Rscript functionality.... Rscript --no-init-file -e 'rnorm(1)' [1] "rnorm(1)" OK Testing a simple KmerGenie e ...
written 3.0 years ago by abujamel.t0
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Comment: C: kmergenie generates histo files but no histograms!
... Thanks Rayan for your reply, I tried sample paird end fastq files with 750K reads and 36 reads length. Same problem. TJ ...
written 3.0 years ago by abujamel.t0
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Comment: C: kmergenie generates histo files but no histograms!
... it is an actual sequencing dataset of metagenomic sequencing generated from Illumina HiSeq2500 sequencing TJ   ...
written 3.0 years ago by abujamel.t0
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Comment: C: kmergenie generates histo files but no histograms!
... Hi Rayan, the files list is as following: kmer-k13.histo kmer-k15.histo kmer-k17.histo kmer-k19.histo kmer-k21.histo kmer-k23.histo kmer-k25.histo kmer-k27.histo kmer-k29.histo kmer-k31.histo kmer-k33.histo kmer-k35.histo kmer-k37.histo kmer-k39.histo kmer-k41.histo kmer-k43.histo kmer-k45.histo k ...
written 3.0 years ago by abujamel.t0
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kmergenie generates histo files but no histograms!
... I am using kmergenie version 1.6473 to estimate the optimal kmer for my assembly. The program runs perfect, but my problem is that it only generates .histo files but no histograms. Here is the command I used: kmergenie unligned_R1.fastq unligned_R2.fastq -o kmer -s 2 -l 13 -t 32   Linear estimat ...
histogram kmergenie written 3.0 years ago by abujamel.t0 • updated 2.4 years ago by marcela.uliano30

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