User: Anaïs Vittu

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Posts by Anaïs Vittu

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Comment: C: MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and
... Hi, My version of c++ is 4.8.3 (MacPorts gcc48 4.8.3_1). ...
written 3.0 years ago by Anaïs Vittu0
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Answer: A: MetaVelvet gets stuck at "Starting pebble resolution..." step (individually and
... Hello, I have the same problem : it blocks at "Starting pebble resolution..." and I use a Mac. Do someone find a way to fix this ?   anais$ meta-velvetg Velvet_out [meta-velvetg] Check command line options... OK. Your command line options seem to be good. [meta-velvetg] Load meta-graph .. ...
written 3.0 years ago by Anaïs Vittu0
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Comment: C: Execution of decide failed (return code 0)
... Indeed, there was a "\n" in the third line. I removed it and Kmergenie worked well. But it is on a Linux machine and it is the version 1.5579. I will install the last version 1.6741 to try. Otherwise, I check something else on my Mac : anais$ kmergenie C0CYDACXX_1.fq running histogram estimation ...
written 3.0 years ago by Anaïs Vittu0
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Comment: C: Execution of decide failed (return code 0)
... Hello, I try on a Linux machine. $ ls -1 *.fq > filesForKmergenie.txt $ kmergenie filesForKmergenie.txt running histogram estimation File filesForKmergenie.txt starts with character "C", hence is interpreted as a list of file names Reading 3 read files error opening file: fitting model to his ...
written 3.0 years ago by Anaïs Vittu0
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Comment: C: Execution of decide failed (return code 0)
... anais$ uname -a Darwin upr9022-127-Anais.local 13.4.0 Darwin Kernel Version 13.4.0: Sun Aug 17 19:50:11 PDT 2014; root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64 anais$ cat /etc/*-release cat: /etc/*-release: No such file or directory The version of KmerGenie that I am using is 1.6741. ...
written 3.1 years ago by Anaïs Vittu0
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Answer: A: Execution of decide failed (return code 0)
... Ok, there are very similar! anais$ ls -1 *.fq C0CYDACXX_1.fq C0CYDACXX_2.fq anais$ ls -1 *.fq > filesToAssemble.txt anais$ kmergenie filesToAssemble.txt running histogram estimation File filesToAssemble.txt starts with character "f", hence is interpreted as a list of file names Reading 0 read ...
written 3.1 years ago by Anaïs Vittu0
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Execution of decide failed (return code 0)
... Hello, I am trying to run kmergenie on paired-end reads. So I created a file with the 2 files and ran kmergenie like below. anais$ ls -l *.fq -rw-r--r-- 1 anais staff 326796250 22 oct 11:58 C0CYDACXX_1.fq -rw-r--r-- 1 anais staff 326796250 22 oct 11:58 C0CYDACXX_2.fq anais$ ls -l *.fq > ...
kmergenie fail written 3.1 years ago by Anaïs Vittu0

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