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Comment: C: confusion with GSEA result with custome gene set
3.2 years ago by SJ Basu ▴ 50
0
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3
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761
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confusion with GSEA result with custome gene set
RNA-Seq enrichment GSEA
3.2 years ago by SJ Basu ▴ 50
0
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2
replies
1.1k
views
Resolving expression profiles of genes with same name but different MSTRG ID
differential-gene-expression RNA-Seq stringtie
updated 10 weeks ago by 43k • written 3.8 years ago by ▴ 50
0
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0
replies
691
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oncoSNP stops run giving MATLAB function error
SNP snp-array array oncosnp matlab
4.0 years ago by SJ Basu ▴ 50
0
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0
replies
1.1k
views
Processing RNA-seq expression for inter sample classification
RNA-Seq stringtie classification DGE
5.0 years ago by SJ Basu ▴ 50
0
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1
reply
3.0k
views
Comment: C: Too low FPKM values from StringTie
5.2 years ago by SJ Basu ▴ 50
0
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2
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3.0k
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Comment: C: Too low FPKM values from StringTie
5.2 years ago by SJ Basu ▴ 50
0
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1
reply
3.0k
views
Comment: C: Too low FPKM values from StringTie
5.2 years ago by SJ Basu ▴ 50
6
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8
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3.0k
views
Too low FPKM values from StringTie
RNA-Seq stringtie new tuxedo
5.2 years ago by SJ Basu ▴ 50
0
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0
replies
893
views
variant calling using data from HaloPlex HS
SNP targetted sequencing HaloPlex HS Agilent
5.6 years ago by SJ Basu ▴ 50
9
votes
19
replies
5.1k
views
13 follow
PBJelly error at mapping level
pbjelly blasr m4 file
updated 6.0 years ago by ▴ 30 • written 7.8 years ago by ▴ 50
1
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1
reply
2.2k
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Answer: A: mapping rate of small rna-seq with different references
6.1 years ago by SJ Basu ▴ 50
0
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0
replies
1.2k
views
characterizing a plasmid genome
plasmid plasmid genome microbiology NGS
6.1 years ago by SJ Basu ▴ 50
0
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0
replies
7.2k
views
Comment: C: Calculating the gene coverage in StringTie
6.2 years ago by SJ Basu ▴ 50
11
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4
replies
7.2k
views
Calculating the gene coverage in StringTie
RNA-Seq StringTie Coverage Gene
updated 6.2 years ago by ▴ 130 • written 6.8 years ago by ▴ 50
0
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0
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7.2k
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Comment: C: Calculating the gene coverage in StringTie
6.2 years ago by SJ Basu ▴ 50
0
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0
replies
1.3k
views
Comment: C: Low reads mapping in methylation sequencing
6.8 years ago by SJ Basu ▴ 50
0
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2
replies
1.3k
views
Low reads mapping in methylation sequencing
medip mapping
updated 6.8 years ago by 22k • written 6.8 years ago by ▴ 50
0
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1
reply
143k
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Comment: C: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
6.8 years ago by SJ Basu ▴ 50
1
vote
2
replies
4.4k
views
Gap-filling and scaffolding using PacBio reads
Assembly genome pacbio pbjelly opera-lg
updated 6.9 years ago by • 0 • written 7.5 years ago by ▴ 50
1
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1
reply
1.9k
views
KEGG Ontology terms depiction/statistics
RNA-Seq metatranscriptome KEGG pathway KO term
updated 7.0 years ago by 27k • written 7.0 years ago by ▴ 50
0
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0
replies
1.4k
views
discrepancy in two known miRNA results in miRDeep2
rna-seq miRNA miRDeep2
7.2 years ago by SJ Basu ▴ 50
0
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0
replies
2.4k
views
Comment: C: Phylogenetic analysis and Substitution rate calculation
7.3 years ago by SJ Basu ▴ 50
2
votes
2
replies
2.4k
views
Phylogenetic analysis and Substitution rate calculation
KaKs DnDs Substitution Phylogenetic
updated 7.4 years ago by ★ 3.0k • written 7.4 years ago by ▴ 50
4
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1
reply
2.1k
views
choice of reference for transcriptome assembly
RNA-Seq Assembly cDNA CDS
updated 7.6 years ago by 20 • written 7.7 years ago by ▴ 50
0
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0
replies
1.8k
views
OPERA-LG error: short reads are not mapping
Assembly OPERA-LG scaffolding
7.6 years ago by SJ Basu ▴ 50
0
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0
replies
1.4k
views
Answer: A: is there a DB for illumina adaptors/contamination?
7.6 years ago by SJ Basu ▴ 50
4
votes
2
replies
2.6k
views
Jellyfish for transcriptome assembly
RNA-Seq Assembly jellyfish K-mer velvet
updated 7.8 years ago by 20k • written 7.8 years ago by ▴ 50
0
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1
reply
2.2k
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Comment: C: Bacterial Genome-Transcriptome mapping anomaly
7.8 years ago by SJ Basu ▴ 50
5
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4
replies
2.2k
views
Bacterial Genome-Transcriptome mapping anomaly
RNA-Seq genome transcriptome SNP prokaryotic
7.8 years ago by SJ Basu ▴ 50
0
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1
reply
5.1k
views
Answer: A: PBJelly error at mapping level
7.8 years ago by SJ Basu ▴ 50
0
votes
1
reply
5.1k
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Comment: A: PBJelly error at mapping level
7.8 years ago by SJ Basu ▴ 50
0
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0
replies
2.3k
views
Comment: C: Retriving the base and its quality from fastq file
8.3 years ago by SJ Basu ▴ 50
0
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1
reply
2.3k
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Comment: C: Retriving the base and its quality from fastq file
8.3 years ago by SJ Basu ▴ 50
2
votes
11
replies
2.3k
views
Retriving the base and its quality from fastq file
RNA-Seq perl sequencing
updated 20 months ago by 43k • written 8.3 years ago by ▴ 50
0
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1
reply
2.3k
views
Comment: C: Retriving the base and its quality from fastq file
8.3 years ago by SJ Basu ▴ 50
0
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1
reply
2.3k
views
Comment: C: Retriving the base and its quality from fastq file
8.3 years ago by SJ Basu ▴ 50
0
votes
0
replies
4.4k
views
Comment: Comment: miRDeep2: expression reads and input reads not tallying
updated 2.2 years ago by 43k • written 9.0 years ago by ▴ 50
0
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0
replies
4.4k
views
Comment: Comment: miRDeep2: expression reads and input reads not tallying
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 50
0
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1
reply
4.4k
views
Comment: Comment: miRDeep2: expression reads and input reads not tallying
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 50
0
votes
1
reply
4.4k
views
Comment: Comment: miRDeep2: expression reads and input reads not tallying
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 50
0
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2
replies
4.4k
views
Comment: Comment: miRDeep2: expression reads and input reads not tallying
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 50
0
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0
replies
4.4k
views
Comment: Comment: miRDeep2: expression reads and input reads not tallying
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 50
0
votes
12
replies
4.4k
views
miRDeep2: expression reads and input reads not tallying
miRDeep2 miRNA
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 50
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