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Showing :
answers
7
votes
0
replies
7.8k
views
Answer:
A: How to filter short length blast results from output
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Siva
★ 1.9k
0
votes
0
replies
2.4k
views
Answer:
A: Using R to calculate diversity between hundreds of orthologous sequences
updated 4.5 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
1
vote
0
replies
2.8k
views
Answer:
A: Best way to find phage genes in microbiome?
updated 4.5 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
1
vote
0
replies
15k
views
Answer:
A: Available pipelines for functional annotaiton (COG, KEGG, GO) of genomes
updated 4.5 years ago by
Ram
43k • written 9.5 years ago by
Siva
★ 1.9k
0
votes
1
reply
2.7k
views
Answer:
Answer: how to test if BLAST installed in perl script?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
0
votes
0
replies
4.1k
views
Answer:
Answer: How to know the query coverage
updated 19 months ago by
Ram
43k • written 8.4 years ago by
Siva
★ 1.9k
0
votes
2
replies
2.7k
views
Answer:
A: -perc_query in local blast searches
8.4 years ago by
Siva
★ 1.9k
0
votes
0
replies
2.3k
views
Answer:
A: Stop BLAST search on any hit
8.4 years ago by
Siva
★ 1.9k
2
votes
1
reply
4.1k
views
Answer:
A: Database to download HMMs for TIGRFAMS and PFAMS ?
8.6 years ago by
Siva
★ 1.9k
0
votes
0
replies
3.4k
views
Answer:
A: Downloading protein sequences for a set of chromosomes from NCBI
8.6 years ago by
Siva
★ 1.9k
0
votes
0
replies
1.8k
views
Answer:
Answer: Identify homolog sequences that appear in multiple RefSeq files
updated 19 months ago by
Ram
43k • written 8.6 years ago by
Siva
★ 1.9k
2
votes
1
reply
4.3k
views
Answer:
Answer: What is in the NCBI chromosome nucleotide database vs nt/refseq_genomic?
updated 19 months ago by
Ram
43k • written 8.6 years ago by
Siva
★ 1.9k
1
vote
1
reply
5.5k
views
Answer:
A: "Protein search using Blastp" vs "protein search using hmm profile"
9.1 years ago by
Siva
★ 1.9k
0
votes
0
replies
3.7k
views
Answer:
A: Mapping peptide to the source genomic region
9.2 years ago by
Siva
★ 1.9k
5
votes
1
reply
2.2k
views
Answer:
A: Can I reach NCBI protein sequences with their corresponding NCBI urls?
9.2 years ago by
Siva
★ 1.9k
7
votes
2
replies
15k
views
Answer:
Answer: BLAST via Biopython NCBIWWW. Where can I find the complete database list?
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
0
votes
0
replies
2.2k
views
Answer:
Answer: Cancer related Pathway Annotations
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
0
votes
0
replies
2.1k
views
Answer:
Answer: makeblastdb with organism names instead of gi number
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
0
votes
0
replies
4.1k
views
Answer:
Answer: Draw heatmaps for large dataset 2000x40
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
3
votes
0
replies
1.7k
views
Answer:
Answer: What is this alignment program? [Pictured]
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
2
votes
1
reply
2.4k
views
Answer:
A: Terminology for "amino acid frame"
9.2 years ago by
Siva
★ 1.9k
0
votes
0
replies
2.9k
views
Answer:
A: Raxml continue interrupted bootstrap run
9.2 years ago by
Siva
★ 1.9k
1
vote
0
replies
3.6k
views
Answer:
A: Homologous gene matching between mouse and human
9.2 years ago by
Siva
★ 1.9k
2
votes
0
replies
4.5k
views
Answer:
A: Makeblastdb - parallel speed ups?
9.2 years ago by
Siva
★ 1.9k
1
vote
1
reply
5.9k
views
Answer:
Answer: Removing identifier with "unavailable sequence" from FASTA file
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
3
votes
1
reply
2.4k
views
Answer:
Answer: Error in code
updated 2.1 years ago by
Ram
43k • written 9.2 years ago by
Siva
★ 1.9k
3
votes
2
replies
8.1k
views
Answer:
Answer: blast execution in linux
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
2
votes
1
reply
3.3k
views
Answer:
Answer: Refseq proteins for several taxids
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
0
votes
0
replies
2.0k
views
Answer:
Answer: Retrieve batch subject span FASTA
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
2
votes
0
replies
4.2k
views
Answer:
Answer: Which bioinformatics books would you recommend to a programmer / software engine
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
1
vote
1
reply
8.5k
views
Answer:
Answer: Why the local blast and online blast produce different results?
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
0
votes
0
replies
1.9k
views
Answer:
Answer: BLAST+ Subtractive genomics
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
1
vote
1
reply
12k
views
Answer:
Answer: Map genetic mutations to protein domain/structure
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
0
votes
1
reply
12k
views
Answer:
A: COG assignment using COGNITOR (COGsoft)
9.3 years ago by
Siva
★ 1.9k
9
votes
1
reply
13k
views
Answer:
Answer: Blast+ results file parsing to fasta file
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
0
votes
1
reply
3.9k
views
Answer:
Answer: Obtaining alignment from psiblast
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
1
vote
0
replies
7.3k
views
Answer:
A: Strange "Error: OID not found" in NCBI's blastdbcmd
9.3 years ago by
Siva
★ 1.9k
1
vote
2
replies
8.7k
views
Answer:
Answer: Perl code to get starting and ending position of list of peptides from the prote
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Siva
★ 1.9k
1
vote
0
replies
69k
views
Answer:
A: Recommend Your Favorite Bioinformatics Books
9.3 years ago by
Siva
★ 1.9k
2
votes
1
reply
2.6k
views
Answer:
A: Database to extract all human proteins having disulphide bonds from pdb, uniprot
9.4 years ago by
Siva
★ 1.9k
2
votes
1
reply
2.4k
views
Answer:
A: PolyA site/signal feature from NCBI GenBank File
9.4 years ago by
Siva
★ 1.9k
1
vote
1
reply
3.8k
views
Answer:
Answer: BLAT does appear anything in the results but blat worked.
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
3
votes
0
replies
9.5k
views
Answer:
Answer: Vintage / unconventional pictures for Bioinformatics
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
4
votes
0
replies
9.4k
views
Answer:
A: Any software to view newick/nexus trees command line?
9.4 years ago by
Siva
★ 1.9k
1
vote
0
replies
3.3k
views
Answer:
A: tests for negative selection
9.4 years ago by
Siva
★ 1.9k
1
vote
1
reply
3.6k
views
Answer:
Answer: Hmmscan Bias Values Greater than One
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
1
vote
1
reply
1.9k
views
Answer:
Answer: gene homology evidence
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
0
votes
0
replies
6.4k
views
Answer:
Answer: detection of positive selection in population using Tajima's n Fu Li test
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
2
votes
0
replies
4.3k
views
Answer:
Answer: Looking for an aligned multi-FASTA file in order to practice building phylogenet
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
0
votes
1
reply
2.0k
views
Answer:
Answer: Filter all repeat-derived sequences from UniProtKB/Swiss-Prot
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Siva
★ 1.9k
79 results • Page
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