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39
votes
11
replies
16k
views
11 follow
Best Database Of Transcription Factor Binding Sites
transcription binding database
updated 8 months ago by • 0 • written 12.6 years ago by ★ 2.8k
1
vote
2
replies
1.1k
views
SmartSeq2 with STARsolo gives only one cell
scRNA-seq SmartSeq STARsolo
updated 17 months ago by 77k • written 20 months ago by ★ 2.8k
4
votes
6
replies
2.2k
views
Creating reference genome for mapping and then selecting
mm10 hg38 STAR RNA-seq
updated 2.5 years ago by 98k • written 2.5 years ago by ★ 2.8k
1
vote
1
reply
600
views
bwa mem piped to samtools is not working strange error
samtools bwa mem
2.7 years ago by Dataminer ★ 2.8k
0
votes
3
replies
2.7k
views
Shiny board with seurat object
Seurat Shiny
updated 2.7 years ago by ▴ 360 • written 2.8 years ago by ★ 2.8k
2
votes
1
reply
1.1k
views
to consider only intronic reads in cell ranger pipeline
cell ranger snRNA
updated 2.8 years ago by 12k • written 2.8 years ago by ★ 2.8k
2
votes
1
reply
2.3k
views
How to tackle low reads in RNA-Seq data and compute differential expression
RNA-Seq RSEM STAR
updated 3.2 years ago by 20 • written 7.4 years ago by ★ 2.8k
7
votes
4
replies
1.5k
views
Mismatch in probe ids
Affymetrix Microarray
updated 3.3 years ago by 86k • written 3.3 years ago by ★ 2.8k
18
votes
8
replies
3.2k
views
Open Question For Bioinformaticians .... Need Some Ideas
chip-seq
updated 3.3 years ago by 20 • written 11.1 years ago by ★ 2.8k
3
votes
6
replies
1.1k
views
Processing bulk RNA-seq TMM matrix to get DEGs
RNA-Seq
updated 3.5 years ago by 77k • written 3.5 years ago by ★ 2.8k
39
votes
22
replies
28k
views
12 follow
Sift Or Polyphen
snp non mutation
updated 3.9 years ago by ★ 1.1k • written 12.6 years ago by ★ 2.8k
3
votes
1
reply
2.7k
views
Linking SNPs to DNA methylation calls
DNA-methylation SNP
updated 20 months ago by 40k • written 9.0 years ago by ★ 2.8k
9
votes
17
replies
5.2k
views
Paired end peak callers
ChIP-Seq
updated 4.2 years ago by ▴ 50 • written 4.6 years ago by ★ 2.8k
7
votes
5
replies
3.6k
views
(Online) Courses In System Biology
written 10.5 years ago by ★ 2.8k
2
votes
3
replies
4.3k
views
Overlapping Peaks And Distance Between Them....
chip-seq
updated 4.3 years ago by 20 • written 12.4 years ago by ★ 2.8k
32
votes
19
replies
14k
views
8 follow
Statistical Measure Of Biological Significance For Overlapping Genomic Regions
statistics overlap
updated 9 months ago by 40k • written 12.4 years ago by ★ 2.8k
1
vote
1
reply
1.3k
views
Your favourite workflow for Hi-C data analysis (Plant Genome)
Hi-C
updated 4.4 years ago by 20 • written 4.5 years ago by ★ 2.8k
5
votes
9
replies
2.4k
views
Hi-C data alignment with star
star hi-c
updated 4.7 years ago by ▴ 370 • written 4.7 years ago by ★ 2.8k
0
votes
0
replies
2.6k
views
creating loom files using loomR
loomR RNA-seq
4.8 years ago by Dataminer ★ 2.8k
-1
votes
18
replies
10k
views
Effective Genome Size In Macs [Hg19]
macs genomics
updated 5.1 years ago by ▴ 90 • written 10.9 years ago by ★ 2.8k
6
votes
16
replies
3.1k
views
BigWig from ensembl assembly to UCSC session
Bigwig UCSC ENSEMBL
updated 5.3 years ago by 103k • written 5.3 years ago by ★ 2.8k
3
votes
2
replies
2.3k
views
Creatig TrackHubs from BigWigs
trackHubs genome
updated 20 months ago by 40k • written 9.1 years ago by ★ 2.8k
5
votes
6
replies
2.5k
views
heat map and Survival plot
RNA-Seq Survival-plot K-M plot R
updated 5.3 years ago by 86k • written 5.3 years ago by ★ 2.8k
17
votes
8
replies
8.6k
views
6 follow
Differential Peaks Between Replicates
chip-seq
updated 5.4 years ago by 20 • written 10.6 years ago by ★ 2.8k
22
votes
10
replies
9.0k
views
Peaks And Nearby Genes
chip-seq
updated 6.4 years ago by ▴ 120 • written 12.4 years ago by ★ 2.8k
6
votes
4
replies
3.6k
views
From In Silico Identification Of Deleterious Snps To In Vitro Validation Of Same
snp pubmed
updated 7.3 years ago by 20 • written 11.8 years ago by ★ 2.8k
25
votes
14
replies
13k
views
8 follow
Database Of Drugs Targeting Genes
genomics drug
updated 7.3 years ago by ★ 5.2k • written 11.6 years ago by ★ 2.8k
2
votes
1
reply
2.9k
views
Signature genes from RNA-seq time series (Developmental)
RNA-seq edgeR DEseq
7.3 years ago by Dataminer ★ 2.8k
28
votes
7
replies
26k
views
7 follow
Extracting List Of Genes Associated With A Pathway In Kegg
pathway
updated 10 months ago by 40k • written 10.5 years ago by ★ 2.8k
12
votes
4
replies
2.5k
views
Categorising A List Of Refseq Id With Prefix Nr_ Into Mirna, Sn0Rna, And Trna
annotation genomics
updated 3 months ago by 40k • written 11.1 years ago by ★ 2.8k
48
votes
14
replies
25k
views
8 follow
Gene Network Construction... Web Based Tool
gene-network
updated 3 months ago by 40k • written 12.3 years ago by ★ 2.8k
6
votes
3
replies
7.6k
views
To extract row names of plotted heatmap
R heatmap
updated 7.8 years ago by 7.5k • written 7.8 years ago by ★ 2.8k
3
votes
1
reply
2.2k
views
GWAS regions in CANCER
SNP GWAS
updated 19 months ago by 40k • written 8.8 years ago by ★ 2.8k
13
votes
11
replies
5.3k
views
6 follow
Clustering ... Any Web Based Tools
clustering
updated 7.9 years ago by 20 • written 12.3 years ago by ★ 2.8k
3
votes
1
reply
1.9k
views
Must have packages on the Rstudio while doing NGS (ChIP/RNA/DNAme) related analysis
DNAme RNA-Seq R Downstream ChIP-Seq
updated 13 months ago by 40k • written 7.9 years ago by ★ 2.8k
2
votes
6
replies
11k
views
Annotatepeaks Function From Homer
genomics
updated 8.0 years ago by • 0 • written 11.1 years ago by ★ 2.8k
8
votes
6
replies
3.2k
views
Biological Pathways And Drug Designing
pathway drug
updated 11 months ago by 40k • written 12.6 years ago by ★ 2.8k
18
votes
7
replies
5.0k
views
6 follow
How About Starting A Tutorial For Chip Seq Data Analysis?
chip-seq next-gen sequencing
updated 15 months ago by 40k • written 12.3 years ago by ★ 2.8k
7
votes
5
replies
2.9k
views
Tools to identify biologically relevant SNP calls from a vcf file
SNP
updated 3 months ago by 40k • written 8.9 years ago by ★ 2.8k
2
votes
5
replies
2.4k
views
Can these fusion predictions by tophat be trusted
Tophat
updated 18 months ago by 40k • written 9.0 years ago by ★ 2.8k
1
vote
4
replies
2.6k
views
How different the different ChIP-seq samples are ....
ChIP-Seq
updated 24 months ago by 40k • written 9.4 years ago by ★ 2.8k
4
votes
3
replies
3.0k
views
Is There A Way To Get The Single Best Model From A Group Of Models/States Generated By Chromhmm?
chip-seq
updated 19 months ago by 40k • written 10.5 years ago by ★ 2.8k
8
votes
5
replies
3.5k
views
Confusion with High Confidence SNP Calls (Overlap B/w RNA-seq & WGBS calls) and Genome Assemblies Used for Alignment and Annotation
SNP WGBS SNPEff RNA-Seq
updated 20 months ago by 40k • written 8.9 years ago by ★ 2.8k
14
votes
10
replies
5.1k
views
Reordering the bam file
ChIP-Seq Samtools Bamtools
updated 21 months ago by 40k • written 9.1 years ago by ★ 2.8k
3
votes
2
replies
2.1k
views
How to check if my SNPs are also present in 1000 genome project
1000genomes SNP
updated 21 months ago by 40k • written 9.1 years ago by ★ 2.8k
3
votes
5
replies
2.5k
views
Identifying Motifs In A Geneset
transcription data analysis
updated 9.1 years ago by 20 • written 11.7 years ago by ★ 2.8k
4
votes
1
reply
2.5k
views
Converting Ensemble Gene IDs from mmseq output file
ID-Conversion mmseq BioMart
updated 21 months ago by 40k • written 9.2 years ago by ★ 2.8k
4
votes
2
replies
3.7k
views
Co-occurring TF motifs in peak file from ChIP-seq experiment
ChIP-Seq Motifs
updated 22 months ago by 40k • written 9.2 years ago by ★ 2.8k
4
votes
2
replies
4.2k
views
Vcf File From Mpileup ... What Next
variant-calling samtools snps
updated 9.2 years ago by 20 • written 9.6 years ago by ★ 2.8k
9
votes
5
replies
3.9k
views
Differentially expressed genes from RPKM
RNA-Seq
updated 22 months ago by 40k • written 9.2 years ago by ★ 2.8k
103 results • Page 1 of 3
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