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36k
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"Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror" Error when installing package
R shiny-server
7.0 years ago by AB ▴ 360
0
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0
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36k
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Answer: A: "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror
7.0 years ago by AB ▴ 360
0
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0
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2.5k
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Answer: A: extract SNP, variants
7.0 years ago by AB ▴ 360
2
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5
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5.0k
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Picard MergeSam error : Cannot use index file with textual SAM file
picard mergesam
7.0 years ago by AB ▴ 360
0
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1
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5.0k
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Comment: A: Picard MergeSam error : Cannot use index file with textual SAM file
7.0 years ago by AB ▴ 360
0
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1
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5.0k
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Comment: C: Picard MergeSam error : Cannot use index file with textual SAM file
7.0 years ago by AB ▴ 360
0
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0
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1.9k
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Comment: C: bam-readcount : Reference_base is not the base with highest count
7.1 years ago by AB ▴ 360
4
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3
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1.9k
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bam-readcount : Reference_base is not the base with highest count
bam-readcount
updated 7.1 years ago by 6.2k • written 7.1 years ago by ▴ 360
0
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0
replies
1.8k
views
Very high negative scores from bigWigAverageOverBed
ChIP-Seq bigWigAverageOverBed
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 360
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0
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3.0k
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Comment: C: Finding distribution of indels from vcf file
7.5 years ago by AB ▴ 360
4
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2
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3.0k
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Finding distribution of indels from vcf file
vcf samtools barplots
updated 7.5 years ago by ★ 3.8k • written 7.5 years ago by ▴ 360
0
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0
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1.8k
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What is a good cutoff of mappability score from bigWigAverageOverBed ?
ChIP-Seq bigWigAverageOverBed
7.6 years ago by AB ▴ 360
0
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1
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3.1k
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Comment: C: what do negative values from bigWigAverageOverBed output mean?
7.6 years ago by AB ▴ 360
2
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3
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3.1k
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what do negative values from bigWigAverageOverBed output mean?
ChIP-Seq bigWigAverageOverBed deepTools
updated 7.6 years ago by 104k • written 7.6 years ago by ▴ 360
1
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1
reply
2.4k
views
Calculating FPKM of reads that overlap regions of interest
ChIP-Seq fpkm bedtools
7.7 years ago by AB ▴ 360
9
votes
2
replies
4.7k
views
MACS2 Peak Calling : Different number of peaks for each replicate
ChIP-Seq biological-replicates MACS2
updated 20 months ago by 43k • written 8.2 years ago by ▴ 360
0
votes
1
reply
1.7k
views
Finding out if non-coding transcripts from CPAT are tissue specific?
RNA-Seq CPAT lncRNA
updated 21 months ago by 43k • written 8.2 years ago by ▴ 360
3
votes
6
replies
3.3k
views
Differential binding analysis of motif-containing peaks
ChIP-Seq FIMO DiffBind
updated 21 months ago by 43k • written 8.2 years ago by ▴ 360
0
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0
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3.3k
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Comment: A: Differential binding analysis of motif-containing peaks
8.2 years ago by AB ▴ 360
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0
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3.3k
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Comment: C: Differential binding analysis of motif-containing peaks
8.2 years ago by AB ▴ 360
1
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3
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1.8k
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Determine Condition using LogFC values
RNA-Seq fold-changes
updated 20 months ago by 43k • written 8.3 years ago by ▴ 360
0
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1
reply
3.1k
views
Removing batch effects from RPKM data
rpkm batch effect limma removeBatchEffect()
updated 8.5 years ago by 6.5k • written 8.5 years ago by ▴ 360
0
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1
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9.8k
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Comment: C: PCA plot of RPKM data from RNA-Seq dataset
8.5 years ago by AB ▴ 360
13
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6
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9.8k
views
PCA plot of RPKM data from RNA-Seq dataset
RNA-Seq bioconductor pca rpkm
updated 8.5 years ago by ▴ 760 • written 8.5 years ago by ▴ 360
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