User: queenofcold

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queenofcold10
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United States
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5 years ago
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5 years ago
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Posts by queenofcold

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Comment: C: How to set-up mutiple SPAdes runs for various genomes
... Actually, I don't know for sure that I am NOT doing that. I am following a template for arrays suggested by our sys admin. I have tried 2 different approaches. 1. INPUT_FILE=[cat /yaml_files | sed -n "${SGE_TASK_ID}p"] spades.py -k 21,31,55,77 --careful --dataset $INPUT_FILE -o /SPAde ...
written 5.1 years ago by queenofcold10 • updated 12 months ago by RamRS25k
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How to set-up mutiple SPAdes runs for various genomes
... I am in the process of cobbling together a NGS pipeline for trimming, assembling, and annotating genomes for our group and I also have very limited bioinformatics experience. I would like to be able to run several SPAdes jobs at once. Thankfully, I have access to a cluster that uses SGE. However, I ...
array assembly spades written 5.1 years ago by queenofcold10 • updated 5.1 years ago by RamRS25k

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