User: dinesh

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dinesh50
Reputation:
50
Status:
New User
Location:
India
Last seen:
3 years, 1 month ago
Joined:
4 years, 10 months ago
Email:
d*******@gmail.com

Posts by dinesh

<prev • 40 results • page 1 of 4 • next >
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Comment: A: how to determine the threshold gene expression values using GCOS microaray platf
... dear all thanks for your quick response, i want find genes from multiple series eg: GSE3053 GSE4438 GSE4471 GSE5167 GSE6719 GSE6720 GSE6737 which belong to one platform GPL2025. in this regard suggest me the best way to find the common genes which were deferentially expressed on all the experiments ...
written 3.2 years ago by dinesh50 • updated 3.2 years ago by WouterDeCoster40k
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Comment: C: how to determine the threshold gene expression values using GCOS microaray platf
... Thanks for your response, i am new to handling microarray data. my boss has asked me to find the genes for multiple abiotic stress using data from NCBI GEO. In the process i have came across the signal intensity values generated from MAS5.0 and GCOS having values eg: 364, 311, 259 etc., for control ...
written 3.2 years ago by dinesh50
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how to convert the MAS5.0 intensity values to normalized log2 value of microarray data.
... HI every one, I am working on NCBI GEO data for identifying cumulative gene for stress. in the process i have came across the signal intensity values generated from MAS5.0 and GCOS. i am interested to know that is it appropriate to change the intensity values to normalized log2 value. if yes, how to ...
gene assembly microarray blast sequencing written 3.2 years ago by dinesh50 • updated 3.2 years ago by Pierre Lindenbaum122k
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how to determine the threshold gene expression values using GCOS microaray platform...?
... how to determine the threshold gene expression values using GCOS microaray platform...? ...
microarray written 3.2 years ago by dinesh50 • updated 3.1 years ago by Biostar ♦♦ 20
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RSAT: matrix scan result interpretation
... hi every one, i am trying to predict putative transcription factor binding site(TFBS) using RSAT tools based on position weight matrix. in that process i came across results like presented below. please help me interpreting the results. training set sequence:  TGGGTCCCACAT (experimentally validated ...
interpretation rsat results written 4.3 years ago by dinesh50
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candidate gene identification
... hi community, need suggestions i have physical position of SNPs and i have to find the candidate gene near by SNPs. help to solve this problem. eg : chromosome 3 position  196643035 ...
gene snp written 4.4 years ago by dinesh50 • updated 4.4 years ago by Alex Reynolds28k
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Tutorial: power marker input file format for GBS data
... hi. a warm good morning I am working on powermarker software for identifying the gene diversity from (8000) SNP markers obtained from GBS. the file format is .hap. please tell me how to convert into coding format (0,1) that can that be used has input for power marker. i read the manual but i am not ...
gene tutorial next-gen snp written 4.5 years ago by dinesh50
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structure software : simulation summery results empty
... i am working on structure software to stratify the population structure from my data originated from SNPs. i decoded the marker information successfully to numerically.  the parameter information are 68 individuals , 21 markers, missing values -9 5000/50000 result : the summery simmulation is no ...
sequence snp written 4.5 years ago by dinesh50 • updated 21 months ago by Biostar ♦♦ 20
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Comment: C: Plink input format
... hello sir, actually i am having SNP data in hapmap format generated by GBS (crop=maize), i converted the hap to .ped  and .map format. the ped form as usually has six column with missing FID,parents, SEX, phenotype. In these regard when i tried calculate allel frequency on chromosome wise, the out p ...
written 4.5 years ago by dinesh50
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Plink input format
... hi,  can any one say how to write script in plink having only individual ID and genotype data, I am not having  family ID, parental ID, sex and phenotype.    ...
tutorial snp written 4.5 years ago by dinesh50 • updated 4.5 years ago by chrchang5235.5k

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Popular Question 4.3 years ago, created a question with more than 1,000 views. For STRUCTURE software for GBS SNP data

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