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374
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Comment: Comment: HTseq no features
11 weeks ago by michael.ante ★ 3.8k
1
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0
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613
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Comment: Comment: RNA seq for different tissues samples
6 months ago by michael.ante ★ 3.8k
0
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1
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480
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Comment: Comment: finding overlapping motifs to increase length of motif
6 months ago by michael.ante ★ 3.8k
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0
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282
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Comment: Comment: Quantify gene expression using flanking sequences
8 months ago by michael.ante ★ 3.8k
1
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0
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1.7k
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Comment: Comment: Searching for mRNA ending with a specific 3' pattern in NON-poly-A RNASeq data.
21 months ago by michael.ante ★ 3.8k
0
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1
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1.3k
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Comment: C: How to extract sequences from multiple fastq files based on part of the header?
2.2 years ago by michael.ante ★ 3.8k
1
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0
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517
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Comment: C: How to interpret one region of gene with much higher RNASeq coverage than other
2.2 years ago by michael.ante ★ 3.8k
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0
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1.1k
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Comment: C: How to identify 3'UTR region?
3.3 years ago by michael.ante ★ 3.8k
0
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0
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1.2k
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Comment: C: featureCounts log: "WARNING contig is not found in the provided genome file!"
3.3 years ago by michael.ante ★ 3.8k
0
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1
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1.9k
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Answer: A: How to interpret the differences of read counts using htseq and feature counts?
3.4 years ago by michael.ante ★ 3.8k
0
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0
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847
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Comment: C: Would curated pathway gene set better being weighted than being binary
3.4 years ago by michael.ante ★ 3.8k
0
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1
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847
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Comment: C: Would curated pathway gene set better being weighted than being binary
3.4 years ago by michael.ante ★ 3.8k
0
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0
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1.4k
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Comment: C: Extract sequences from fastA files based on csv chart in R
3.5 years ago by michael.ante ★ 3.8k
0
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1
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1.4k
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Comment: C: Extract sequences from fastA files based on csv chart
3.5 years ago by michael.ante ★ 3.8k
0
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0
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1.4k
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Comment: C: Error in piRNA gtf file while featurecounts step in STAR aligner?
3.5 years ago by michael.ante ★ 3.8k
0
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1
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1.2k
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Comment: C: STAR error (segmentation fault) in Aligning reads
3.5 years ago by michael.ante ★ 3.8k
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2
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1.2k
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Comment: C: FASTQ exctract ID's
3.5 years ago by michael.ante ★ 3.8k
1
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1
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1.2k
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Comment: C: STAR error (segmentation fault) in Aligning reads
3.5 years ago by michael.ante ★ 3.8k
0
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1
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1.4k
views
Answer: A: Error in piRNA gtf file while featurecounts step in STAR aligner?
3.5 years ago by michael.ante ★ 3.8k
2
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1
reply
753
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Answer: C: Scaleable trimming of GenBank sequences?
3.5 years ago by michael.ante ★ 3.8k
0
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0
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825
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Comment: C: Data set containing corresponding RNA-seq and RT-Qpcr data
3.5 years ago by michael.ante ★ 3.8k
0
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0
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1.3k
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Answer: A: Transcription factor target gene
3.5 years ago by michael.ante ★ 3.8k
0
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1
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2.4k
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Comment: C: bash loop to count variants using vcftools
updated 3.5 years ago by 39k • written 7.5 years ago by ★ 3.8k
0
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0
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1.8k
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Comment: C: RNA-SeQC v1.1.8 transcript_id attribute was not found
3.5 years ago by michael.ante ★ 3.8k
1
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1
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2.2k
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Answer: A: two questions in loading data
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
0
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1
reply
2.0k
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Answer: A: Tophat, low alignement left read
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
2
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1
reply
1.8k
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Answer: A: Joining two files with multiple columns
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
1
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0
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5.8k
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Comment: C: How to confirm forward primer matches each read without removing primer sequence
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
2
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1
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29k
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Comment: C: getting intersect between two lists of genes in R
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
1
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1
reply
29k
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Comment: C: getting intersect between two lists of genes in R
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
1
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1
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29k
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Comment: C: getting intersect between two lists of genes in R
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
0
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1
reply
3.6k
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Comment: C: Annotating RNA-Seq exon junctions
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
3
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1
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4.1k
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Comment: C: Merge 2 files based on rs number but keep all info only from the first file
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
9
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1
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2.5k
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Answer: A: Can FPKM be added?
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
3
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1
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1.6k
views
Answer: C: awk, copy and paste single line command
updated 3.5 years ago by 85k • written 3.6 years ago by ★ 3.8k
0
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0
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1.8k
views
Comment: C: Nothing will align with HTSeq?
updated 3.6 years ago by 39k • written 7.7 years ago by ★ 3.8k
3
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1
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2.7k
views
Answer: A: error in getting sorted bam
updated 3.6 years ago by 39k • written 7.8 years ago by ★ 3.8k
2
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1
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5.0k
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Comment: C: Using featureCount with a GFF file
3.6 years ago by michael.ante ★ 3.8k
1
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1
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5.0k
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Comment: C: Using featureCount with a GFF file
3.6 years ago by michael.ante ★ 3.8k
0
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1
reply
6.6k
views
Comment: C: Removing barcode and adapters?
updated 3.6 years ago by 39k • written 7.9 years ago by ★ 3.8k
14
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5
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27k
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Answer: A: Converstion of BED with scores into bigWig
updated 3.6 years ago by 39k • written 7.9 years ago by ★ 3.8k
0
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0
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5.6k
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Comment: C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
3.6 years ago by michael.ante ★ 3.8k
1
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0
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3.0k
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Comment: C: salmon was only able to assign 0 fragments to transcripts
3.6 years ago by michael.ante ★ 3.8k
0
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1
reply
1.6k
views
Comment: C: awk, copy and paste single line command
3.6 years ago by michael.ante ★ 3.8k
1
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0
replies
2.4k
views
Comment: C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
3.6 years ago by michael.ante ★ 3.8k
0
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1
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2.4k
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Comment: A: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
3.6 years ago by michael.ante ★ 3.8k
1
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1
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951
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Answer: A: Interpret genome alignment results
3.6 years ago by michael.ante ★ 3.8k
0
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0
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1.1k
views
Comment: C: Are reads with the same length and position always "duplicates"
3.6 years ago by michael.ante ★ 3.8k
0
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1
reply
1.2k
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Comment: C: can I use soft-clip RNA-seq reads to summarize gene counts?
3.6 years ago by michael.ante ★ 3.8k
2
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1
reply
2.0k
views
Comment: Comment: Which tool/method to use for Raw data quality evaluation and filtering
updated 15 months ago by 39k • written 8.5 years ago by ★ 3.8k
411 results • Page 1 of 9
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