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Answer: A: How to interpret the differences of read counts using htseq and feature counts?
3.4 years ago by michael.ante ★ 3.8k
0
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1
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1.4k
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Answer: A: Error in piRNA gtf file while featurecounts step in STAR aligner?
3.4 years ago by michael.ante ★ 3.8k
2
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1
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748
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Answer: C: Scaleable trimming of GenBank sequences?
3.4 years ago by michael.ante ★ 3.8k
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0
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1.2k
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Answer: A: Transcription factor target gene
3.5 years ago by michael.ante ★ 3.8k
1
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1
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2.2k
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Answer: A: two questions in loading data
updated 3.5 years ago by 39k • written 7.5 years ago by ★ 3.8k
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1
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2.0k
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Answer: A: Tophat, low alignement left read
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
2
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1
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1.8k
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Answer: A: Joining two files with multiple columns
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
9
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1
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2.5k
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Answer: A: Can FPKM be added?
updated 3.5 years ago by 39k • written 7.6 years ago by ★ 3.8k
3
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1
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1.5k
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Answer: C: awk, copy and paste single line command
updated 3.5 years ago by 85k • written 3.6 years ago by ★ 3.8k
3
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1
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2.7k
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Answer: A: error in getting sorted bam
updated 3.5 years ago by 39k • written 7.8 years ago by ★ 3.8k
14
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5
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27k
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Answer: A: Converstion of BED with scores into bigWig
updated 3.6 years ago by 39k • written 7.9 years ago by ★ 3.8k
1
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1
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948
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Answer: A: Interpret genome alignment results
3.6 years ago by michael.ante ★ 3.8k
0
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0
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2.7k
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Answer: A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
3.7 years ago by michael.ante ★ 3.8k
0
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0
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2.6k
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Answer: A: sequence length distribution
3.7 years ago by michael.ante ★ 3.8k
0
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0
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743
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Answer: A: Bed file of union of all transcripts for a set of genes
3.7 years ago by michael.ante ★ 3.8k
1
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0
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1.6k
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Answer: A: How to count total small RNAs (known and novel) in my aligned reads?
3.7 years ago by michael.ante ★ 3.8k
3
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1
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1.1k
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Answer: A: BAM File size increased after extracting unique reads
3.8 years ago by michael.ante ★ 3.8k
0
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0
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865
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Answer: A: hisat2-build half done
4.0 years ago by michael.ante ★ 3.8k
0
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2
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2.3k
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Answer: A: mash configure error --with-gsl can not find gsl
updated 4.1 years ago by 129k • written 4.1 years ago by ★ 3.8k
1
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1
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1.7k
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Answer: A: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
4.2 years ago by michael.ante ★ 3.8k
3
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1
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899
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Answer: C: Inconsistent number Pandaseq vs grep
4.2 years ago by michael.ante ★ 3.8k
2
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0
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1.3k
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Answer: A: Htseq-count result assistance
4.2 years ago by michael.ante ★ 3.8k
0
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1
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4.4k
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Answer: C: STAR fusion error
4.2 years ago by michael.ante ★ 3.8k
1
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0
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1.1k
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Answer: A: STAR and HTSeq command line parameters for 3' mRNA-Seq data
4.2 years ago by michael.ante ★ 3.8k
6
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0
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5.2k
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Answer: C: How do I know if I have DNA contamination in RNA-seq data?
4.3 years ago by michael.ante ★ 3.8k
2
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2
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1.8k
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Answer: A: HTseq code error repeatedly
4.3 years ago by michael.ante ★ 3.8k
0
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1
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953
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Answer: A: count file zero
4.3 years ago by michael.ante ★ 3.8k
1
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1
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588
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Answer: A: Finding smallest sequence which distinguish any DNA sample
4.3 years ago by michael.ante ★ 3.8k
2
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0
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11k
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Answer: A: The Longest Chromosome > Sizeof(Int32)
4.3 years ago by michael.ante ★ 3.8k
0
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1
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1.7k
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Answer: A: RNA-seq alignment against globin genes (HBA1, HBA1, and HBB)
4.3 years ago by michael.ante ★ 3.8k
0
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1
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3.8k
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Answer: A: Overrepresented stretches of Gs in NovaSeq library
4.4 years ago by michael.ante ★ 3.8k
1
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0
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2.4k
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Answer: A: Infer experiment - Failed to determine strandin paired end stranded RNA-seq
4.4 years ago by michael.ante ★ 3.8k
2
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1
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1.1k
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Answer: C: To find the genes encoding for Transcription factor in a given list
4.5 years ago by michael.ante ★ 3.8k
1
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1
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2.7k
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Answer: C: umi_tools extract error: IndexError: string index out of range
4.5 years ago by michael.ante ★ 3.8k
2
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2
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4.3k
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Answer: A: estimating read length and SD for Kallisto (single-end QuantSeq reads)
4.5 years ago by michael.ante ★ 3.8k
0
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0
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1.7k
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Answer: A: How to generate custom fasta and gtf files for RNA spike-ins
4.5 years ago by michael.ante ★ 3.8k
1
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1
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2.9k
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Answer: A: how to extract counts from bam/merge-bam without gtf
4.6 years ago by michael.ante ★ 3.8k
2
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0
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1.1k
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Answer: A: Extract sequence ID from Fasta for a given sequence
4.6 years ago by michael.ante ★ 3.8k
0
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0
replies
2.7k
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Answer: A: Aligning reads to genome together with transcriptome
updated 4.7 years ago by 39k • written 7.3 years ago by ★ 3.8k
2
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1
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6.9k
views
Answer: A: RPKM to FPKM conversion
updated 4.7 years ago by 39k • written 7.3 years ago by ★ 3.8k
2
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0
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1.9k
views
Answer: A: Good mean coverage but big std in coverage
4.7 years ago by michael.ante ★ 3.8k
1
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0
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4.7k
views
Answer: A: Post Your Prefered Bioinformatics Short Code
updated 4.7 years ago by 39k • written 8.1 years ago by ★ 3.8k
3
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1
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1.3k
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Answer: A: Extracting the sequence of isoforms from RNA-seq data
4.8 years ago by michael.ante ★ 3.8k
2
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1
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3.3k
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Answer: A: Counting reads aligned to forward or reverse strand
4.8 years ago by michael.ante ★ 3.8k
0
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0
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3.1k
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Answer: A: comparing two files and adding columns of one file to another file if a fields i
4.8 years ago by michael.ante ★ 3.8k
1
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0
replies
3.1k
views
Answer: A: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for w
4.8 years ago by michael.ante ★ 3.8k
1
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1
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1.7k
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Answer: A: RNA-seq : Quantification problem after mapped with BBMap
4.8 years ago by michael.ante ★ 3.8k
0
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0
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1.3k
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Answer: A: Create an assembly with a ribosomic chromosome
4.8 years ago by michael.ante ★ 3.8k
1
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1
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1.8k
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Answer: A: featureCounts problem annotation
4.9 years ago by michael.ante ★ 3.8k
1
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0
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1.8k
views
Answer: A: FastX toolkit - problems with Collapser
4.9 years ago by michael.ante ★ 3.8k
162 results • Page 1 of 4
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