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Comment: C: Count matrix from bigwig files - Application
3.6 years ago by michael.ante ★ 3.8k
1
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0
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945
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Comment: C: How to calculate the number of functional proteins in GFF3 file
3.6 years ago by michael.ante ★ 3.8k
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1
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1.6k
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Comment: C: STAR output soft-clipped reads instead of insertion
3.6 years ago by michael.ante ★ 3.8k
2
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1
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2.9k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
3.6 years ago by michael.ante ★ 3.8k
1
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1
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945
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Comment: C: How to calculate the number of functional proteins in GFF3 file
3.6 years ago by michael.ante ★ 3.8k
1
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0
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1.5k
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Comment: C: Question about featureCounts
3.6 years ago by michael.ante ★ 3.8k
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0
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1.5k
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Comment: C: Reverse Complement Reads in BAM File
3.6 years ago by michael.ante ★ 3.8k
1
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0
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1.6k
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Comment: C: Stringtie and prepDE
3.6 years ago by michael.ante ★ 3.8k
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1
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1.5k
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Comment: C: Clipping primer after alignment
3.7 years ago by michael.ante ★ 3.8k
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0
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2.7k
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Answer: A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
3.7 years ago by michael.ante ★ 3.8k
1
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0
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671
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Comment: C: General guidance with project about gene duplication
3.7 years ago by michael.ante ★ 3.8k
1
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0
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853
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Comment: C: HT-seq-count default parameter to "score"secondary alignments contradicts its do
3.7 years ago by michael.ante ★ 3.8k
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0
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2.6k
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Answer: A: sequence length distribution
3.7 years ago by michael.ante ★ 3.8k
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0
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743
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Answer: A: Bed file of union of all transcripts for a set of genes
3.7 years ago by michael.ante ★ 3.8k
1
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0
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1.6k
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Answer: A: How to count total small RNAs (known and novel) in my aligned reads?
3.7 years ago by michael.ante ★ 3.8k
0
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1
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2.1k
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Comment: C: Converting and sorting .sam at the same time
3.7 years ago by michael.ante ★ 3.8k
3
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1
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1.1k
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Answer: A: BAM File size increased after extracting unique reads
3.8 years ago by michael.ante ★ 3.8k
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0
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864
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Answer: A: hisat2-build half done
4.0 years ago by michael.ante ★ 3.8k
1
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1
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27k
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Comment: C: Converstion of BED with scores into bigWig
4.1 years ago by michael.ante ★ 3.8k
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2
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2.3k
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Answer: A: mash configure error --with-gsl can not find gsl
updated 4.1 years ago by 129k • written 4.1 years ago by ★ 3.8k
0
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0
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2.3k
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Comment: C: mash configure error --with-gsl can not find gsl
4.1 years ago by michael.ante ★ 3.8k
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0
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1.6k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
4.1 years ago by michael.ante ★ 3.8k
0
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1
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1.7k
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Comment: C: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
4.2 years ago by michael.ante ★ 3.8k
1
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1
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1.7k
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Answer: A: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
4.2 years ago by michael.ante ★ 3.8k
0
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1
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4.1k
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Comment: C: HTSeq & featureCounts show no features
4.2 years ago by michael.ante ★ 3.8k
0
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1
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4.1k
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Comment: C: HTSeq & featureCounts show no features
4.2 years ago by michael.ante ★ 3.8k
0
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1
reply
1.6k
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Comment: C: About the ERCC spike-in sequence reads quantification
4.2 years ago by michael.ante ★ 3.8k
0
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1
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1.6k
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Comment: C: About the ERCC spike-in sequence reads quantification
4.2 years ago by michael.ante ★ 3.8k
0
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0
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1.1k
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Comment: C: Is there a tool that filters a sam/bam file by the following: (1) similarity sco
4.2 years ago by michael.ante ★ 3.8k
1
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1
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1.2k
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Comment: C: col as names
4.2 years ago by michael.ante ★ 3.8k
3
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1
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899
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Answer: C: Inconsistent number Pandaseq vs grep
4.2 years ago by michael.ante ★ 3.8k
0
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0
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1.3k
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Comment: C: Htseq-count result assistance
4.2 years ago by michael.ante ★ 3.8k
1
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1
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1.2k
views
Comment: C: col as names
4.2 years ago by michael.ante ★ 3.8k
2
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0
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1.2k
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Comment: C: col as names
4.2 years ago by michael.ante ★ 3.8k
2
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0
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1.3k
views
Answer: A: Htseq-count result assistance
4.2 years ago by michael.ante ★ 3.8k
0
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0
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1.2k
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Comment: C: Bowtie Index building for wheat genome
4.2 years ago by michael.ante ★ 3.8k
0
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0
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1.2k
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Comment: C: Bowtie Index building for wheat genome
4.2 years ago by michael.ante ★ 3.8k
1
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1
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4.4k
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Comment: C: STAR fusion error
4.2 years ago by michael.ante ★ 3.8k
0
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1
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4.4k
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Answer: C: STAR fusion error
4.2 years ago by michael.ante ★ 3.8k
1
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0
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1.1k
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Answer: A: STAR and HTSeq command line parameters for 3' mRNA-Seq data
4.2 years ago by michael.ante ★ 3.8k
2
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1
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4.4k
views
Comment: C: STAR fusion error
4.2 years ago by michael.ante ★ 3.8k
6
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0
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5.2k
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Answer: C: How do I know if I have DNA contamination in RNA-seq data?
4.2 years ago by michael.ante ★ 3.8k
1
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0
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4.6k
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Comment: C: bedtools intersect error?
4.3 years ago by michael.ante ★ 3.8k
0
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1
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1.2k
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Comment: A: problem in conversion of sam to bam file
4.3 years ago by michael.ante ★ 3.8k
0
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0
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2.1k
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Comment: C: Alternative splicing analysis
4.3 years ago by michael.ante ★ 3.8k
2
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2
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1.8k
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Answer: A: HTseq code error repeatedly
4.3 years ago by michael.ante ★ 3.8k
0
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1
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953
views
Comment: C: count file zero
4.3 years ago by michael.ante ★ 3.8k
0
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0
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953
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Comment: C: count file zero
4.3 years ago by michael.ante ★ 3.8k
0
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1
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953
views
Answer: A: count file zero
4.3 years ago by michael.ante ★ 3.8k
0
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0
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588
views
Comment: C: Finding smallest sequence which distinguish any DNA sample
4.3 years ago by michael.ante ★ 3.8k
411 results • Page 2 of 9
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