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0
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0
replies
1.1k
views
Comment:
C: Data set containing corresponding RNA-seq and RT-Qpcr data
5.2 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
1.7k
views
Answer:
A: Transcription factor target gene
5.2 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
3.2k
views
Comment:
C: bash loop to count variants using vcftools
updated 5.2 years ago by
Ram
44k • written 9.2 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
2.3k
views
Comment:
C: RNA-SeQC v1.1.8 transcript_id attribute was not found
5.2 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
3.1k
views
Answer:
A: two questions in loading data
updated 5.2 years ago by
Ram
44k • written 9.2 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
2.5k
views
Answer:
A: Tophat, low alignement left read
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
2
votes
1
reply
2.2k
views
Answer:
A: Joining two files with multiple columns
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
7.0k
views
Comment:
C: How to confirm forward primer matches each read without removing primer sequence
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
2
votes
1
reply
33k
views
Comment:
C: getting intersect between two lists of genes in R
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
33k
views
Comment:
C: getting intersect between two lists of genes in R
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
33k
views
Comment:
C: getting intersect between two lists of genes in R
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
4.5k
views
Comment:
C: Annotating RNA-Seq exon junctions
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
3
votes
1
reply
4.8k
views
Comment:
C: Merge 2 files based on rs number but keep all info only from the first file
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
9
votes
1
reply
3.2k
views
Answer:
A: Can FPKM be added?
updated 5.2 years ago by
Ram
44k • written 9.3 years ago by
michael.ante
★ 3.9k
3
votes
1
reply
2.5k
views
Answer:
C: awk, copy and paste single line command
updated 5.2 years ago by
Kevin Blighe
89k • written 5.3 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
2.8k
views
Comment:
C: Nothing will align with HTSeq?
updated 5.2 years ago by
Ram
44k • written 9.4 years ago by
michael.ante
★ 3.9k
3
votes
1
reply
3.2k
views
Answer:
A: error in getting sorted bam
updated 5.3 years ago by
Ram
44k • written 9.5 years ago by
michael.ante
★ 3.9k
2
votes
1
reply
7.9k
views
Comment:
C: Using featureCount with a GFF file
5.3 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
7.9k
views
Comment:
C: Using featureCount with a GFF file
5.3 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
7.7k
views
Comment:
C: Removing barcode and adapters?
updated 5.3 years ago by
Ram
44k • written 9.6 years ago by
michael.ante
★ 3.9k
14
votes
5
replies
35k
views
Answer:
A: Converstion of BED with scores into bigWig
updated 5.3 years ago by
Ram
44k • written 9.6 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
9.0k
views
Comment:
C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
5.3 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
4.6k
views
Comment:
C: salmon was only able to assign 0 fragments to transcripts
5.3 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
2.5k
views
Comment:
C: awk, copy and paste single line command
5.3 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
3.8k
views
Comment:
C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.3 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
3.8k
views
Comment:
A: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.3 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
1.5k
views
Answer:
A: Interpret genome alignment results
5.3 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
2.2k
views
Comment:
C: Are reads with the same length and position always "duplicates"
5.3 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
2.0k
views
Comment:
C: can I use soft-clip RNA-seq reads to summarize gene counts?
5.3 years ago by
michael.ante
★ 3.9k
2
votes
1
reply
2.6k
views
Comment:
Comment: Which tool/method to use for Raw data quality evaluation and filtering
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
7.2k
views
Comment:
C: Count matrix from bigwig files - Application
5.3 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
1.4k
views
Comment:
C: How to calculate the number of functional proteins in GFF3 file
5.3 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
2.5k
views
Comment:
C: STAR output soft-clipped reads instead of insertion
5.3 years ago by
michael.ante
★ 3.9k
2
votes
1
reply
4.2k
views
Comment:
C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
5.3 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
1.4k
views
Comment:
C: How to calculate the number of functional proteins in GFF3 file
5.3 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
2.3k
views
Comment:
C: Question about featureCounts
5.3 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
2.1k
views
Comment:
C: Reverse Complement Reads in BAM File
5.3 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
2.0k
views
Comment:
C: Stringtie and prepDE
5.4 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
2.4k
views
Comment:
C: Clipping primer after alignment
5.4 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
4.9k
views
Answer:
A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.4 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
927
views
Comment:
C: General guidance with project about gene duplication
5.4 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
1.3k
views
Comment:
C: HT-seq-count default parameter to "score"secondary alignments contradicts its do
5.4 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
3.3k
views
Answer:
A: sequence length distribution
5.4 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
1.1k
views
Answer:
A: Bed file of union of all transcripts for a set of genes
5.4 years ago by
michael.ante
★ 3.9k
1
vote
0
replies
2.2k
views
Answer:
A: How to count total small RNAs (known and novel) in my aligned reads?
5.4 years ago by
michael.ante
★ 3.9k
0
votes
1
reply
3.4k
views
Comment:
C: Converting and sorting .sam at the same time
5.4 years ago by
michael.ante
★ 3.9k
3
votes
1
reply
1.5k
views
Answer:
A: BAM File size increased after extracting unique reads
5.5 years ago by
michael.ante
★ 3.9k
0
votes
0
replies
1.3k
views
Answer:
A: hisat2-build half done
5.7 years ago by
michael.ante
★ 3.9k
1
vote
1
reply
35k
views
Comment:
C: Converstion of BED with scores into bigWig
5.8 years ago by
michael.ante
★ 3.9k
0
votes
2
replies
2.8k
views
Answer:
A: mash configure error --with-gsl can not find gsl
updated 5.8 years ago by
GenoMax
149k • written 5.8 years ago by
michael.ante
★ 3.9k
441 results • Page
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