User: andorjkiss

gravatar for andorjkiss
andorjkiss10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
11 hours ago
Joined:
5 years, 8 months ago
Email:
a*********@gmail.com

Posts by andorjkiss

<prev • 17 results • page 2 of 2 • next >
3
votes
1
answer
382
views
5 follow
1
answer
What kind of Affymetrix SNP 6.0 datafile is this?
... Hi, I'm new to microarray data formats and I'm wondering exactly what state this data is in (normalised?, CEL (txt version)? It's publically available data from the Osteosarcoma study from NCI TARGET. It's Affymetrix SNP 6.0 (human). TIA Example here: SampleName ...
snp 6.0 affymetrix written 13 months ago by andorjkiss10
0
votes
2
answers
1.7k
views
2
answers
Answer: A: How do you interpret the results from GSEA analysis in CLC Genomics workbench?
... There's a section in the manual that explains how the GSEA test is implemented: http://resources.qiagenbioinformatics.com/manuals/clcmainworkbench/780/index.php?manual=Gene_set_enrichment_analysis.html Conceptually, the entry to wikipedia (https://en.wikipedia.org/wiki/Gene_set_enrichment_analysis ...
written 21 months ago by andorjkiss10
0
votes
2
answers
1.2k
views
2
answers
Comment: C: How to analyse RNA-Seq data with JUST geneID and TPM values
... Yeah, thanks - this is also my feeling - without the FASTQ, we're (I'm) making a lot of assumptions - especially with isoforms and potential non-unique fragment mappings (I didn't analyse the data initially). Thanks All. ...
written 2.3 years ago by andorjkiss10
0
votes
2
answers
1.2k
views
2
answers
Comment: C: How to analyse RNA-Seq data with JUST geneID and TPM values
... Okay, thanks for the tip on DESeq2. Further to this discussion, if one has the output of SAMSeq (R smar), is there a means to easily visualise this data? I have the following in tabular data (gene_ID; mean_length; mean_eff_length; est_counts; tpm) for disease/non-disease states. ...
written 2.3 years ago by andorjkiss10
0
votes
2
answers
1.2k
views
2
answers
Comment: C: How to analyse RNA-Seq data with JUST geneID and TPM values
... Thanks, I'll check it out. But my sense of DESeq2 is that one needed the total counts... ...
written 2.3 years ago by andorjkiss10
5
votes
2
answers
1.2k
views
2
answers
How to analyse RNA-Seq data with JUST geneID and TPM values
... Hi, I have a spreadsheet with the geneIDs and the TPM values only. Is there any software that will analyse this in terms of Differential Gene Expression, possibly GO? Or is this pretty much just a big laundry list? Thanks, Andor ...
geneid tpm rna-seq dge written 2.3 years ago by andorjkiss10 • updated 2.3 years ago by igor11k
0
votes
0
answers
1.8k
views
0
answers
News: Total RNA Commercial Kit Comparison Study
... New (Open Access) paper comparing commercial total RNA isolation kits for small amounts of animal tissues URL: http://www.biomedcentral.com/1472-6750/14/94/abstract ...
ngs microarray news qpcr rna-seq written 5.7 years ago by andorjkiss10

Latest awards to andorjkiss

Popular Question 7 months ago, created a question with more than 1,000 views. For Total RNA Commercial Kit Comparison Study
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Total RNA Commercial Kit Comparison Study

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1537 users visited in the last hour