User: andremrsantos

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Posts by andremrsantos

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Snap aligner FASTQ record larger than buffer
... Hi everyone, I've been trying to run SNAP-aligner (http://snap.cs.berkeley.edu/) to process some SRA samples. But I found some troubles when running it. I decompressed SRA into gzip fastq files and runned the following command: $ snap-aligner paired ~/rsc/hg38_snap \ ../raw/ERR1019070 ...
software error alignment snap written 17 months ago by andremrsantos0 • updated 12 months ago by predeus860
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Comment: C: DESeq sample organization
... I 've tried to perform this analysis on two steps. First I loaded the data normal using ~ type design and perform AD x NT compare and GC x NT . Later I loaded the data excluding the first sample and using the design ~type + sample and compared AD x NT. is this wrong? or I should use your tr ...
written 4.3 years ago by andremrsantos0
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DESeq sample organization
... I am studying some transcript diferencial expression between Cancer and Adjacent tissues. My sample is organized as follows: sample type Barcode_01 01 NT Barcode_03 02 GC Barcode_04 02 AD Barcode_05 03 GC Barcode_06 03 AD Barcode_07 04 AD Barcode_08 ...
software error deseq rna-seq tool written 4.3 years ago by andremrsantos0 • updated 4.3 years ago by Michael Love1.8k

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Popular Question 3.7 years ago, created a question with more than 1,000 views. For DESeq sample organization

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