User: Deepak Tanwar

gravatar for Deepak Tanwar
Deepak Tanwar4.0k
Reputation:
4,040
Status:
Trusted
Location:
ETH Zürich, Switzerland
Website:
https://www.linkedin.c...
Twitter:
d_k_tanwar
Last seen:
1 month, 4 weeks ago
Joined:
5 years, 7 months ago
Email:
d*******@hotmail.com

I received my Bachelor in Technology with major in Bioinformatics from Amity University Rajasthan, India in 2014. I did my Bachelor thesis at University of Jena, Germany, where I worked on a Sepsis patient data set and got my thesis published with GRIN publishers. I took my first job as a Visiting Scientist at University of Alabama at Birmingham, USA in 2014. I worked on Cancer patient datasets obtained from TCGA, ICGC and Cosmic consortiums. My findings suggest that mitochondria directed therapies can impact survival of epithelial ovarian cancer patients, which is published in Oncotarget. I have also worked on Proteomes from Pfam and Uniprot databases, aiming to create a N-gram language models of protein domain architecture to investigate evolution and to derive a new method of phylogenetic tree construction. My background and training is in Bioinformatics (Data Science) and am currently pursuing a PhD. at ETH Zürich, Switzerland.

Posts by Deepak Tanwar

<prev • 162 results • page 2 of 17 • next >
3
votes
0
answers
1.0k
views
0
answers
Test files to test pipeline
... Hello everyone, I would like to create some small test fastq files and small reference genomes to test my pipeline. **What I have?** Few `bam` files. **What I want?** 1. Short `fastq` files from my `bam files`. 2. Short `reference genome` to align those `fastq` files. ...
chip-seq written 3.0 years ago by Deepak Tanwar4.0k
0
votes
1
answer
3.0k
views
1
answers
Comment: C: Row label in heatmap
... Can you show the code and output you are getting? ...
written 3.2 years ago by Deepak Tanwar4.0k
1
vote
1
answer
929
views
1
answers
Comment: C: chipseq data analysis
... Which peak caller would you suggest @Devon? ...
written 3.3 years ago by Deepak Tanwar4.0k
0
votes
7
answers
15k
views
7
answers
Comment: C: Bioinformatics courses, workshops or training
... Alright! got that! Thanks ...
written 3.3 years ago by Deepak Tanwar4.0k
0
votes
7
answers
15k
views
7
answers
Comment: C: Bioinformatics courses, workshops or training
... Can you please point out some from the list? I have numbered all of them. I have attempted to have only free courses in the list, if you can point out, I will remove them. Thanks! ...
written 3.3 years ago by Deepak Tanwar4.0k
2
votes
5
answers
6.5k
views
5
answers
Comment: C: NGS files shrinkage software: ALAPY Compressor, only fastq file so far =)
... Can you please also add [xz][1] to the comparison. `xz -9` or maybe only `xz -3`, as it takes less time. [1]: http://tukaani.org/xz/ ...
written 3.3 years ago by Deepak Tanwar4.0k
1
vote
2
answers
2.5k
views
2
answers
Comment: C: What is the relationship between library size and normalization factor?
... Thank you [Santosh Anand](https://www.biostars.org/u/24747/) for your reply. I do understand what you wrote. But, what I intended to ask is, what does this mean? I understand that there is very good (linear) correlation among two variables and on variable can be predicted from other. What's Biologi ...
written 3.3 years ago by Deepak Tanwar4.0k
4
votes
2
answers
2.5k
views
5 follow
2
answers
What is the relationship between library size and normalization factor?
... I saw this plot ![doi.org/10.3389/fgene.2016.00164](http://www.frontiersin.org/files/Articles/203326/fgene-07-00164-HTML/image_m/fgene-07-00164-g001.jpg) [doi.org/10.3389/fgene.2016.00164](https://doi.org/10.3389/fgene.2016.00164) >Normalization factors for the fruit set RNA-Seq data dependi ...
normalization library size normalization factor written 3.3 years ago by Deepak Tanwar4.0k • updated 2.0 years ago by elie.maza0
7
votes
1
answer
2.9k
views
8 follow
1
answer
How to Install SGE (Sun Grid Engine) on macOS Sierra?
... > This Question could be little offtrack. I am trying to install SGE on MacPro. This would be useful in scheduling NGS analysis. I have tried a lot: https://bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ http://sparsefile.blogspot.ca/2012/06/installing-open-grid-scheduler-aka-sun.html https ...
sge macos written 3.3 years ago by Deepak Tanwar4.0k • updated 2.4 years ago by se3940
9
votes
2
answers
657
views
5 follow
2
answers
Are Gene Ontologies hand curated?
... Are all [GO terms][1] manually curated or are they computationally curated or mixture of both? How about GO from [MSigDB][2] ? [1]: http://www.geneontology.org/ [2]: http://software.broadinstitute.org/gsea/msigdb/ ...
msigdb go written 3.3 years ago by Deepak Tanwar4.0k • updated 3.3 years ago by LLTommy1.2k

Latest awards to Deepak Tanwar

Popular Question 8 weeks ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Scholar 8 months ago, created an answer that has been accepted. For A: GO term enrichment
Scholar 8 months ago, created an answer that has been accepted. For A: normilization with RMA
Scholar 8 months ago, created an answer that has been accepted. For A: Difficulty installing keggrest and httr in R
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Can someone tell me journal with 1 impactfactor with minimum charge around INR 6
Popular Question 15 months ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Popular Question 17 months ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Popular Question 17 months ago, created a question with more than 1,000 views. For Are protein domains indivisible?
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Interships in Bioinformatcs
Popular Question 21 months ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Epic Question 21 months ago, created a question with more than 10,000 views. For Bioinformatics courses, workshops or training
Popular Question 23 months ago, created a question with more than 1,000 views. For Graph viewer for Reactome Pathways
Popular Question 23 months ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Using markdown for two or more programming languages
Great Question 2.6 years ago, created a question with more than 5,000 views. For Bioinformatics courses, workshops or training
Appreciated 2.9 years ago, created a post with more than 5 votes. For A: GO term enrichment
Student 3.0 years ago, asked a question with at least 3 up-votes. For Which is the best smoothing technique for replacing zeros from data?
Commentator 3.3 years ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 3.3 years ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 3.3 years ago, created a comment with at least 3 up-votes. For C: Bioinformatics courses, workshops or training.
Commentator 3.3 years ago, created a comment with at least 3 up-votes. For C: Can someone tell me journal with 1 impactfactor with minimum charge around INR 6
Appreciated 3.3 years ago, created a post with more than 5 votes. For A: pathway analysis tools and KEGG gene sets from MSigDB
Appreciated 3.3 years ago, created a post with more than 5 votes. For Using markdown for two or more programming languages
Appreciated 3.3 years ago, created a post with more than 5 votes. For A: GO term enrichment

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1845 users visited in the last hour