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Posts by nitsuaq
... First, is there a reason your gene universe is so small? Bigger gene universes make enrichment analyses more stable and reproducible. Depending on where you are getting your data, I would say 800 genes is very low for a gene universe. For human tissue I expect at least several thousand, otherwise I ...
Answer: A: Topgo Vs Gostats
... To avoid the following situation: I tried both GOstats and topGO briefly before switching to topGO for all of my GO enrichment analysis in R. Its been a while but from what I remember it seemed more versatile, i.e. one can employ various default algorithm/test combinations (along with the capabilit ...
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Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: topGO which statistical test (fisher or KS) to use ?
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