User: hongbing.li

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Posts by hongbing.li

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Comment: C: Problem for pindel2vcf to create VCF file from pindel created _D files
... Hi winnie, Following is resolved by Liangkeye for me grep ChrID P2_Index_13_P375_D > P2_Index_13_P375_D.head.txt ../pindel2vcf -p P2_Index_13_P375_D.head.txt -r hg19.fasta -R hg19-GRCh37 -d 200902 -v P2_Index_13_P375_D.head.txt.vcf I hope this will help you! Best reagrds, Hongbing Li From: ...
written 2.8 years ago by hongbing.li0
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Comment: C: Problem for pindel2vcf to create VCF file from pindel created _D files
... Problem has been resolved by Lingkaiye. Thanks for all of you! ...
written 2.8 years ago by hongbing.li0
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Answer: A: Problem for pindel2vcf to create VCF file from pindel created _D files
... Thanks for all your response, and I have sent files to kye@genome.wustl.edu ...
written 2.8 years ago by hongbing.li0
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Comment: A: Problem for pindel2vcf to create VCF file from pindel created _D files
... Thanks for your remind . ...
written 2.8 years ago by hongbing.li0
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Problem for pindel2vcf to create VCF file from pindel created _D files
... Hi I am new pindel user, and use ../pindel -f hg19.fasta -i p1_config.txt -c ALL -o P2_Index_95_P319 to create P2_Index_95_P319 with _SI, _D, and so on. When I use pindel2vcf to create vcf file with _SI. I got it. and also found some interesting insertion. But when I create vcf filw with_D, using " ...
software error pindel2vcf pindel written 2.8 years ago by hongbing.li0

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Popular Question 2.2 years ago, created a question with more than 1,000 views. For Problem for pindel2vcf to create VCF file from pindel created _D files

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