User: jyalda2

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jyalda230
Reputation:
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Status:
New User
Location:
Belgium
Last seen:
4 years, 11 months ago
Joined:
4 years, 11 months ago
Email:
j******@gmail.com

Posts by jyalda2

<prev • 13 results • page 1 of 2 • next >
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Your explanation was really helpful :) Actually I did this, I tried to find the location of genes and search by location on chr. but non of them worked. I'll try again. Thanks ...
written 5.0 years ago by jyalda230
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Comment: A: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Your explanation was really helpful :) Actually I did this, I tried to find the location of genes and search by location on chr. but non of them worked. I'll try again. Thanks ...
written 5.0 years ago by jyalda230
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Thank you for your help :) what `chr1:14410` stand for? I searched but got confused a bit! :P I want to see the positive and negative control to check whether the data set is good . when I type and search for housekeeping genes or known dis-regulated genes or genes that is mentioned in the related ...
written 5.0 years ago by jyalda230 • updated 14 months ago by RamRS24k
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Result: ![Result][1] different zoom in: ![][2] *** ![][3] *** [1]: http://i.imgur.com/L94II4r.jpg [2]: http://i.imgur.com/r0qFCVx.jpg [3]: http://i.imgur.com/YrjH8hH.jpg ...
written 5.0 years ago by jyalda230 • updated 14 months ago by RamRS24k
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Screen shot after running `samtools view -h [bamfile] | head -30` : ![][1] [1]: http://i.imgur.com/npAtMmw.jpg ...
written 5.0 years ago by jyalda230 • updated 14 months ago by RamRS24k
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... I did but no difference! ...
written 5.0 years ago by jyalda230
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Zoomed in but still nothing! ![][1] [1]: http://i.imgur.com/mRPfEgy.jpg ...
written 5.0 years ago by jyalda230 • updated 14 months ago by RamRS24k
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Thanks. Sorry, I don't have background of bioinformatic and linux. so I have to search for each command! can I post the screen shot? ...
written 5.0 years ago by jyalda230 • updated 14 months ago by RamRS24k
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Image of IGV : ![][1] Sorry, I don't have background of bioinformatic and linux. so I have to search for each command! can i post the screen shot? [1]: http://i.imgur.com/rCgnE7I.jpg ...
written 5.0 years ago by jyalda230 • updated 14 months ago by RamRS24k
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Comment: C: I loaded a BAM (RNA-seq) file into IGV but cant see anything!
... Yes I'm zoomed in. I can see reference genes but nothing for my files! I wanted to upload a screenshot of my work on IGV here but dont know how?! I wanted to use UCSC but that one also needs BAM + .bai file. In galaxy could not upload it noted that its >2G so cant be uploaded! ...
written 5.0 years ago by jyalda230

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