User: Mo

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Mo920
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Posts by Mo

<prev • 191 results • page 2 of 20 • next >
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Comment: C: qPCR results interpretation
... @Angel what is this log2FC ? if you have 4 treatments and controls for it, you should also say how many replicate you have , and I assume then you can have 4 logFC and not only 1, But looking at your example, I found that it is a synthesis experiments, again if this is your data and not portion of ...
written 4.7 years ago by Mo920
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Answer: A: How to remove contamination from NGS data
... have a look at this package in R, it showed promising results http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843372/ ...
written 4.8 years ago by Mo920
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Comment: C: MS1 data analysis
... @arunbodd what do you want to do? what is the goal of your experiment? what is the sample ? how is your sample prepared? all the strategy you followed or you are going to follow should be explained so that we can have a better clue. ...
written 4.8 years ago by Mo920
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Comment: C: Error in `[.data.frame`(pData(eset), , symLabel) : undefined columns selected
... @Shamim Sarhadi it shows in the error message that getDataset does not exist as a function in the inSilicoMerging package. I suggest you make a small example of your data and then tell what you want to do, so people could help you easier ...
written 4.8 years ago by Mo920
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Answer: C: How to identify the loci producing differential small RNAs between two samples?
... @biolab I suggest DESeq2 because it was built for such analysis! since you have replicate , I do not see any problem , good luck ...
written 4.8 years ago by Mo920
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Comment: C: Proteome Analysis Tools
... @avinashdhar123 there you have single sequence and multi sequence tab, look at below "Input your query as" ...
written 4.8 years ago by Mo920
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Answer: A: Proteome Analysis Tools
... I recommend pClust You can use the server here http://prodata.swmed.edu/pclust/server.cgi You can read about it here http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3590580/ ...
written 4.8 years ago by Mo920
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Comment: C: how to make a network using HPR database?
... @ean-Karim Heriche Lets say only getting direct interactions, is there any automatic way to do it ? ...
written 5.0 years ago by Mo920
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Comment: C: what information can I obtain from a bunch of proteins IDs?
... @Pierre Lindenbaum how can I save the result as .SIF in order to load it to Cytoscape ? I will appreciate your comment ...
written 5.0 years ago by Mo920
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Comment: C: how to make a network using HPR database?
... @Jean-Karim Heriche can you please give different examples? ...
written 5.0 years ago by Mo920

Latest awards to Mo

Appreciated 3.9 years ago, created a post with more than 5 votes. For How would you master a programming language (e.g. R, python etc)
Great Question 3.9 years ago, created a question with more than 5,000 views. For Differential gene Analysis by Limma
Popular Question 3.9 years ago, created a question with more than 1,000 views. For Differential gene Analysis by Limma
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: How to apply RLM normalization to a protein expression matrix in R?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For is there any way to covert SRA files to Fasta in R ?
Popular Question 4.3 years ago, created a question with more than 1,000 views. For is there any way to covert SRA files to Fasta in R ?
Popular Question 4.5 years ago, created a question with more than 1,000 views. For is there any way to covert SRA files to Fasta in R ?
Commentator 4.6 years ago, created a comment with at least 3 up-votes. For C: PhD vs Field application scientist in industry
Scholar 4.6 years ago, created an answer that has been accepted. For A: What is RMS?
Teacher 4.6 years ago, created an answer with at least 3 up-votes. For A: How to apply RLM normalization to a protein expression matrix in R?
Popular Question 4.9 years ago, created a question with more than 1,000 views. For how can i convert gene symbol to affymetrix IDs ?
Popular Question 4.9 years ago, created a question with more than 1,000 views. For how to perform Kolmogorov-Smirnov statistic in GSEA in R?
Popular Question 5.0 years ago, created a question with more than 1,000 views. For what is next going to happen in bioinformatics?
Popular Question 5.0 years ago, created a question with more than 1,000 views. For How would you master a programming language (e.g. R, python etc)
Popular Question 5.0 years ago, created a question with more than 1,000 views. For How would you master a programming language (e.g. R, python etc)
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Differential gene Analysis by Limma
Popular Question 5.3 years ago, created a question with more than 1,000 views. For Why am I unable to load my data from a tab separated file into R?
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Differential gene Analysis by Limma
Teacher 5.8 years ago, created an answer with at least 3 up-votes. For A: How to apply RLM normalization to a protein expression matrix in R?
Scholar 5.9 years ago, created an answer that has been accepted. For A: What is RMS?
Popular Question 6.0 years ago, created a question with more than 1,000 views. For what is next going to happen in bioinformatics?
Appreciated 6.0 years ago, created a post with more than 5 votes. For what is next going to happen in bioinformatics?
Centurion 6.0 years ago, created 100 posts.
Supporter 6.0 years ago, voted at least 25 times.

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