User: grayapply2009

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grayapply2009240
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Posts by grayapply2009

<prev • 96 results • page 1 of 10 • next >
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... I mean the aesthetics of the figure but I guess it's no big deal since the result is a ggplot object. Thanks. I already made the figure with your help. ...
written 5 days ago by grayapply2009240
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... Hi Jared, since you are one of the developers of dittoSeq, is it possible to revise the dittoDotPlot function so that it makes the plot like the one in the example by default? ...
written 5 days ago by grayapply2009240
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... I just noticed Seurat has a DotPlot function that does the same thing. ...
written 6 days ago by grayapply2009240
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... Thank you. It's a good way to customize the graph. ...
written 6 days ago by grayapply2009240
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... Thank you, my friend. Sounds like a perfect solution to me. I’m trying it now. ...
written 7 days ago by grayapply2009240
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How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... I like this dot plot (Figure a) for showing marker gene expression patterns for the clusters. Any ideas about how to make this plot with ggplot2? Some pseudocode would be enough. ![enter image description here][1] [1]: https://media.springernature.com/full/springer-static/image/art%3A10.1038%2F ...
single cell rnaseq R ggplot2 rna-seq written 7 days ago by grayapply2009240 • updated 6 days ago by zx87549.9k
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Comment: C: DE analysis with limma (What to include in the model?)
... Thank you, Kevin. I just don't understand why subsetting the data could cause such a huge difference. I think I'll just have to read more about their algorithm. By the way, p.value = 0.05 in the topTable represents adjusted p < 0.05. FC > 1.2 is the conventional threshold our lab's been using ...
written 5 months ago by grayapply2009240
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Comment: C: DE analysis with limma (What to include in the model?)
... That IS what I did. Please take a look at my data and the single script I provided in this post. The link is in the last sentence of the post. ...
written 5 months ago by grayapply2009240
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Comment: C: DE analysis with limma (What to include in the model?)
... Hi Kevin, I literally included all my data and code in the post. Please take a look at the last sentence in the above post. There is a link to my data and code. Sorry for not making it clear. ...
written 5 months ago by grayapply2009240
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Comment: C: DE analysis with limma (What to include in the model?)
... Thank you, Davide and Kevin. I included my script and data in this post. Please take a look at them. I really appreciate it if you can help me. ...
written 5 months ago by grayapply2009240

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