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0
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Compare gene expression between scRNAseq and bulk RNAseq data
scRNAseq RNAseq
3.6 years ago by grayapply2009 ▴ 300
1
vote
3
replies
1.6k
views
Extremely high adapter content and low alignment rate in RNAseq
alignment adapter RNAseq
updated 3.8 years ago by 14k • written 3.8 years ago by ▴ 300
4
votes
5
replies
2.7k
views
Most of the top marker genes identified by FindConservativeMarkers (seurat) have negative logFC.
findconservativemarkers single seurat marker cell
updated 3.9 years ago by ★ 18k • written 3.9 years ago by ▴ 300
6
votes
15
replies
11k
views
6 follow
How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
single cell RNAseq ggplot2 RNA-Seq R
updated 14 months ago by ▴ 30 • written 4.3 years ago by ▴ 300
2
votes
14
replies
2.9k
views
DE analysis with limma (What to include in the model?)
DE analysis limma Differential Expression
4.7 years ago by grayapply2009 ▴ 300
0
votes
3
replies
2.4k
views
Strange Mean-Variance plot after Voom Normalization (RNAseq)
RNA-Seq Normalizaton Voom Limma
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 300
2
votes
6
replies
4.5k
views
Treatment VS Control in Single Cell RNAseq analysis
Single Cell RNAseq DE Analysis Treatment Control
updated 12 months ago by 87k • written 4.9 years ago by ▴ 300
9
votes
10
replies
2.5k
views
Why are transcripts of a same gene expressed differently in same samples?
transcript expression RNA-Seq
updated 6.5 years ago by ★ 4.1k • written 6.9 years ago by ▴ 300
4
votes
7
replies
8.2k
views
What does interproscan add to gene annotation?
RNA-Seq de novo transcriptome annotation
updated 6.7 years ago by ▴ 470 • written 9.8 years ago by ▴ 300
5
votes
2
replies
4.0k
views
DNA sequence clustering tools
clustering cdhit redundancy tgicl
updated 8.0 years ago by 20 • written 8.9 years ago by ▴ 300
1
vote
4
replies
3.0k
views
Sample size too small for ARACNE
ARACNE sample size
updated 8.1 years ago by 20 • written 9.7 years ago by ▴ 300
2
votes
6
replies
5.1k
views
interproscan5 doesn't work for nucelotide sequences but works for protein sequences??
interproscan
updated 2.5 years ago by 45k • written 9.8 years ago by ▴ 300
8
votes
6
replies
7.5k
views
How to annotate GEO microarray datasets with GEOquery?
annotation microarray geo
updated 10 months ago by • 0 • written 8.6 years ago by ▴ 300
0
votes
3
replies
1.4k
views
Collapse and average the microarray data
awk microarray average
8.6 years ago by grayapply2009 ▴ 300
2
votes
4
replies
2.1k
views
Pooling microarray data
microarray pool
updated 8.6 years ago by 27k • written 8.6 years ago by ▴ 300
12
votes
14
replies
6.4k
views
Why redundant results from nr database?
blast nr
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 300
0
votes
1
reply
2.7k
views
How to export annotated sequences with gene symbols to a fasta file using blast2go?
blast blast2go GO ID
updated 8.9 years ago by 20 • written 9.0 years ago by ▴ 300
3
votes
5
replies
3.5k
views
How to find the longest common sequence for a cluster of sequences in a fasta file using python?
common fasta phthon longest
9.2 years ago by grayapply2009 ▴ 300
4
votes
7
replies
3.1k
views
How to query nr database using a list of GI numbers to get xml files?
xml annotation blast gi
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 300
0
votes
2
replies
2.2k
views
How to figure out coding sequence based on the results of blastx
annotation coding-sequence
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 300
16
votes
16
replies
7.1k
views
8 follow
Softwares for gene annotation
RNA-Seq gene annotation
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 300
2
votes
2
replies
4.7k
views
Any tutorials for Trinotate?
Trinotate annotation transcriptome
updated 9.8 years ago by 35k • written 9.8 years ago by ▴ 300
0
votes
1
reply
2.6k
views
How to retrieve gene symbols with refseq protein accesion number or gi number?
mysql perl
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 300
5
votes
5
replies
5.0k
views
How to get protein names, gene symbols, refseq numbers, gi numbers... using UCSC mysql?
mysql ucsc
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 300
16
votes
8
replies
32k
views
How to generate a fasta file from a python dictionary or lists?
sequence fasta list dictionary python
updated 2.2 years ago by 45k • written 9.9 years ago by ▴ 300
3
votes
6
replies
3.5k
views
How to deal with the spaces in the sequence names with biopython?
sequence space name biopython
updated 9.9 years ago by 6.0k • written 9.9 years ago by ▴ 300
3
votes
9
replies
8.2k
views
How to find start and stop codon for sequences in a fasta file?
next-gen
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 300
3
votes
4
replies
5.7k
views
Where can I find human protein database to download for blastx?
blast human protein
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 300
13
votes
15
replies
9.9k
views
6 follow
Why the local blast and online blast produce different results?
blast different results
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 300
1
vote
6
replies
8.9k
views
Where can I find transcriptome databases?
transcriptome rna database blast
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 300
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