User: saurabh.gayali

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India
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2 years, 3 months ago
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4 years, 7 months ago
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Posts by saurabh.gayali

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Locating a sequence in multiple fasta files
... FABOX has an option to detect extract sequences containing spoecific headers or part of it. its slow and probably hangs for >200 sequences. Excel on 4 gb ram can very well handle a tab sequence file upto 33000 sequences averaging to 500 aa average length. A formula and filter in such case takes a ...
written 2.4 years ago by saurabh.gayali30
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Comment: C: Locating a sequence in multiple fasta files
... My apology. The markdown language is new to me. I didnt realise the asterik sign has been ommited from the final answer. I have modified equation to show the formula to detect "NADH" anywhere in sentence" Python will be a great solution. We do it in PHP. But sometimes, learning a program is too tid ...
written 2.4 years ago by saurabh.gayali30
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Answer: A: Locating a sequence in multiple fasta files
... I know the windows solution. 1. Combine all fasta to a single fasta. a. Keep all fasta in single folder (I assume they have .fasta extension b. Open cmd and go to that folder c. run > copy *.fasta merged.txt let the commands run and close cmd. rename the merged.txt file to merged.fasta ...
written 3.3 years ago by saurabh.gayali30
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Comment: C: Why BLAST runs slow on windows PC than linux. What is msdos maximum core/RAM lim
... I am sure the test is on linux. As far as I know the commandline of windows (DOS) cannot use more than 1 processor. I lost the reference of the fact. So I am just confirming. ...
written 3.3 years ago by saurabh.gayali30
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Comment: C: Why BLAST runs slow on windows PC than linux. What is msdos maximum core/RAM lim
... The 24 core processor PC has been divided in Linux and Windows by Hyper-V. Main OS is windows. Thats how by shutting linux we can extend windows RAM. ...
written 3.3 years ago by saurabh.gayali30
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Comment: C: Why BLAST runs slow on windows PC than linux. What is msdos maximum core/RAM lim
... Does that mean Windows commandline cannot use all available cores and RAM!!! ...
written 3.3 years ago by saurabh.gayali30
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Why BLAST runs slow on windows PC than linux. What is msdos maximum core/RAM limit?
... I want to run blast that can run in linux as well as windows. However in windows it runs through commandline (cmd=msdos). I can define number of processors in parameters but still on windows it seems to bit slow. Is there any limit on MSDOS regarding maximum RAM or max processors used. I want to r ...
ncbi windows blast cmd linux written 3.3 years ago by saurabh.gayali30 • updated 3.1 years ago by esbeltateresaamaral0
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Comment: C: Alternatives To Galaxy For Wrapping Command Line Tools In A Graphical User Inter
... Mobyle updated link ...
written 3.4 years ago by saurabh.gayali30
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Answer: A: Any Local Gui-Guided Blast Tools?
... Anyone heard of PerfectBlast on GOOGLE CODES   https://code.google.com/p/prfectblast/   Its nice and Portable too and its free ...
written 4.6 years ago by saurabh.gayali30

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