User: marcelelaux

gravatar for marcelelaux
marcelelaux20
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20
Status:
New User
Location:
Canada
Last seen:
11 hours ago
Joined:
4 years, 2 months ago
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m**********@gmail.com

Posts by marcelelaux

<prev • 24 results • page 1 of 3 • next >
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MEGAN Functional Profile and Comparative Analysis doubts
... Hello Megan users! I have some questions for you. I couldn't find my answers through Megan User's Manual, papers, online tutorials or even here in the specialized forums. I have been using MEGAN for over 2 years. My dataset includes 7 metagenomic samples (454) of a water reservoir, 4 over an annual ...
comparative metagenomics lca algorithm megan written 3.4 years ago by marcelelaux20
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Answer: A: Extracting rRNA sequences from illumina metagenomic dataset
... Thank you for all suggestions! I am working with the output from Metaxa2, since it seems pretty accurate. This is my extraction summary, I would be grateful if you to comment and tell me what you think these ratios: I have two datasets of metagenomic sequences (Illumina paired ends, demultiplexed ...
written 3.7 years ago by marcelelaux20
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Answer: A: Extracting rRNA sequences from illumina metagenomic dataset
... Hello, yes, I am trying to use the graphical session over ssh. I just typed java -jar RNAselector.jar and then the dialog box opens but it's really slow.... its not working... Could I run it just from command line? it would be great! Thank you ...
written 3.8 years ago by marcelelaux20
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Extracting rRNA sequences from illumina metagenomic dataset
... Hello I'm trying to extract rRNA sequences from my metagenomic datasets in order to perform diversity analysis on qiime. The overall purpose is compare the microdiversity (one target species) pointed by MUMmer, using the entire dataset and the microdiversity pointed by qiime diversity analysis. So ...
rrnaselector metaxa qiime written 3.8 years ago by marcelelaux20
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MUMmer show-tiling is out of date?
... Hello guys I am doing a recruitment analysis looking for metagenomic islands. The inputs are a fasta file of my target species, extracted from the original metagenomic reads file, and the complete reference genome of my target species. I am using MUMmer Promer utility for the alignment and show-co ...
mummer show-coords recruitment written 4.1 years ago by marcelelaux20 • updated 4.1 years ago by RamRS20k
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Comment: C: Connecting R environment to Mysql databases on Unix system
... no way :( R CMD INSTALL --configure-args='--with-mysql-inc=/usr/include/mysql --with-mysql-lib=/usr/lib/mysql' RMySQL_0.9-3.tar.gz installing to library ‘/root/R/x86_64-redhat-linux-gnu-library/3.1’ installing source package ‘RMySQL’ ... package ‘RMySQL’ successfully unpacked and MD5 sums checked ...
written 4.2 years ago by marcelelaux20
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Comment: C: Connecting R environment to Mysql databases on Unix system
... I got this: [root@Frevo marlaux]# R CMD INSTALL --configure-args='--with-mysql-inc=<base-inc> --with-mysql-lib=<base-lib>' RMySQL_0.9-3.tar.gz installing to library ‘/root/R/x86_64-redhat-linux-gnu-library/3.1’ installing source package ‘RMySQL’ ... * package ‘RMySQL’ successfully u ...
written 4.2 years ago by marcelelaux20 • updated 4.2 years ago by RamRS20k
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Comment: C: Connecting R environment to Mysql databases on Unix system
...   Yes, now install.packages('RMySQL', type='source') command worked, but with the same error :( I think that I really need to this this: could not find the MySQL installation include and/or library   directories.  Manually specify the location of the MySQL   libraries and the header files and re- ...
written 4.2 years ago by marcelelaux20
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Comment: C: Connecting R environment to Mysql databases on Unix system
... I tried to do what you asked me, anything else? ...
written 4.2 years ago by marcelelaux20
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Comment: C: Connecting R environment to Mysql databases on Unix system
... It just logged to MySQL: [marlaux@Frevo ~]$ $which mysql Welcome to the MySQL monitor.  Commands end with ; or \g. Your MySQL connection id is 1084 Server version: 5.1.73 Source distribution Copyright (c) 2000, 2013, Oracle and/or its affiliates. All rights reserved. Oracle is a registered tradem ...
written 4.2 years ago by marcelelaux20

Latest awards to marcelelaux

Popular Question 3.1 years ago, created a question with more than 1,000 views. For Extracting rRNA sequences from illumina metagenomic dataset
Popular Question 3.1 years ago, created a question with more than 1,000 views. For MUMmer show-tiling is out of date?
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Help with custom database of a genera and count of hits (NGS, 454)
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Connecting R environment to Mysql databases on Unix system

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