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6
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5
replies
3.7k
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How to force bcftools to call all variants
calling bcftools mpileup variant call
updated 12 months ago by 141k • written 3.1 years ago by ▴ 140
1
vote
4
replies
1.5k
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Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 3.0 years ago by ▴ 520 • written 3.0 years ago by ▴ 140
0
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0
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1.5k
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Answer: Answer: Variant calling from comparison of assembled genomes where there is only one r
3.0 years ago by Hans ▴ 140
2
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1
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3.7k
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Comment: Comment: How to force bcftools to call all variants
3.1 years ago by Hans ▴ 140
0
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0
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1.2k
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
3.7 years ago by Hans ▴ 140
0
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1
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1.2k
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Comment: C: Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
updated 3.7 years ago by 87k • written 3.7 years ago by ▴ 140
0
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4
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1.2k
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Dinucleodite variants are marked at single nucleotide variant in BCFTOOLS CALL
BCFtools Variant calling
3.7 years ago by Hans ▴ 140
0
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0
replies
2.7k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
updated 4.3 years ago by 43k • written 8.1 years ago by ▴ 140
0
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1
reply
2.4k
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Comment: C: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 140
0
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0
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2.4k
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Comment: A: DiscoSNP parameters for complex genomes with reads starting only at specific res
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 140
1
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0
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4.1k
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Comment: C: DiscoSnp Segmentation fault
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 140
0
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0
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4.1k
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Comment: A: DiscoSnp Segmentation fault
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 140
0
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0
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4.1k
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Comment: A: DiscoSnp Segmentation fault
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 140
0
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1
reply
4.1k
views
Comment: A: DiscoSnp Segmentation fault
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 140
0
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1
reply
4.1k
views
Comment: A: DiscoSnp Segmentation fault
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 140
0
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1
reply
4.1k
views
Comment: C: DiscoSnp Segmentation fault
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 140
0
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0
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4.8k
views
Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
0
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0
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5.7k
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Comment: C: IGV does not show BAM file information
6.5 years ago by Hans ▴ 140
0
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1
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5.7k
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Comment: C: IGV does not show BAM file information
6.5 years ago by Hans ▴ 140
1
vote
13
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5.7k
views
IGV does not show BAM file information
RNA-Seq next-gen igv bam
updated 6.5 years ago by ★ 2.9k • written 6.5 years ago by ▴ 140
0
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1
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5.7k
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Comment: C: IGV does not show BAM file information
updated 6.5 years ago by 161k • written 6.5 years ago by ▴ 140
0
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1
reply
5.7k
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Comment: C: IGV does not show BAM file information
6.5 years ago by Hans ▴ 140
0
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1
reply
5.7k
views
Comment: C: IGV does not show BAM file information
updated 6.5 years ago by 141k • written 6.5 years ago by ▴ 140
0
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1
reply
5.7k
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Comment: C: IGV does not show BAM file information
6.5 years ago by Hans ▴ 140
0
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0
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2.2k
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Comment: C: Structural variation detection from RNA-seq
6.6 years ago by Hans ▴ 140
1
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8
replies
2.2k
views
Structural variation detection from RNA-seq
RNA-Seq Indel
updated 6.6 years ago by 6.4k • written 6.6 years ago by ▴ 140
0
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1
reply
2.2k
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Comment: C: Structural variation detection from RNA-seq
6.6 years ago by Hans ▴ 140
0
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2
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2.2k
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Comment: C: Structural variation detection from RNA-seq
6.6 years ago by Hans ▴ 140
0
votes
1
reply
2.6k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
7.7 years ago by Hans ▴ 140
0
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0
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2.6k
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Comment: C: "Paired-end accessions do not match" error in gsnapl
7.7 years ago by Hans ▴ 140
0
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1
reply
2.6k
views
Comment: C: "Paired-end accessions do not match" error in gsnapl
7.7 years ago by Hans ▴ 140
0
votes
5
replies
2.6k
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"Paired-end accessions do not match" error in gsnapl
gsnapl
7.8 years ago by Hans ▴ 140
0
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0
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2.2k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
7.8 years ago by Hans ▴ 140
0
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1
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2.2k
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Comment: C: gmap error: Length XXXX of quality score differs from length XXX of nucleotides
7.8 years ago by Hans ▴ 140
0
votes
4
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2.2k
views
gmap error: Length XXXX of quality score differs from length XXX of nucleotides in sequence
gmap
updated 7.8 years ago by 9.7k • written 7.8 years ago by ▴ 140
0
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0
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2.7k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
8.1 years ago by Hans ▴ 140
1
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8
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2.7k
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VCF file with reference genome in Discosnp is empty
discosnp
updated 21 months ago by 43k • written 8.3 years ago by ▴ 140
0
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0
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2.7k
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Comment: C: VCF file with refrence genome in Discosnp is epmty
8.3 years ago by Hans ▴ 140
0
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1
reply
2.7k
views
Comment: C: VCF file with refrence genome in Discosnp is epmty
8.3 years ago by Hans ▴ 140
0
votes
5
replies
2.4k
views
DiscoSNP parameters for complex genomes with reads starting only at specific restriction sites
discosnp
updated 20 months ago by 43k • written 8.4 years ago by ▴ 140
5
votes
20
replies
4.1k
views
DiscoSnp Segmentation fault
snp discosnp
updated 19 months ago by 43k • written 8.7 years ago by ▴ 140
2
votes
0
replies
4.1k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 19 months ago by 43k • written 8.7 years ago by ▴ 140
0
votes
1
reply
4.1k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 19 months ago by 43k • written 8.7 years ago by ▴ 140
0
votes
0
replies
4.1k
views
Comment: Comment: DiscoSnp Segmentation fault
updated 19 months ago by 43k • written 8.7 years ago by ▴ 140
1
vote
1
reply
1.9k
views
Lositan does not run simulations and does not read the right number of loci
lositan
updated 23 months ago by 43k • written 9.1 years ago by ▴ 140
4
votes
0
replies
8.1k
views
Answer: A: RepeatMasker library out of date.
9.3 years ago by Hans ▴ 140
0
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4
replies
4.8k
views
filtering and statistics of depth per genotype per SNP of VCF files (solved)
SNP next-gen
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
0
votes
0
replies
4.8k
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Comment: Comment: filtering and statistics of depth per genotype per SNP of VCF files (solved)
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
0
votes
0
replies
4.1k
views
Comment: Comment: converting sam to bam format samtools
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
3
votes
5
replies
4.1k
views
converting sam to bam format samtools
samtools sam bam
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
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