User: eb0906

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eb090610
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United States
Last seen:
4 years, 7 months ago
Joined:
4 years, 9 months ago
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e**********@med.und.edu

Posts by eb0906

<prev • 7 results • page 1 of 1 • next >
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Comment: C: RNA-Seq analysis edgeR
... Thank you for your help! ...
written 4.7 years ago by eb090610
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RNA-Seq analysis edgeR
... We have a time course infection experiment with 12 samples (2 technical replicates and 2 biological replicates per sample). The samples were sequenced on a HiSeq over 2 lanes, 1 x 50 bp reads. 24hr_infection1_lane3 24hr_infection1_ lane4 24hr_infection2_lane3 24hr_infection2_lane4 24hr_contro ...
technicalvsbiological_replicates edger rna-seq written 4.7 years ago by eb090610 • updated 4.7 years ago by Devon Ryan92k
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Comment: C: Hardware requirements for NGS analysis
... Thanks, Devon. For our purposes, we will primarily be using Bowtie. One of my colleagues is currently running cuffdiff on 16 c.elegans samples (15-16M reads/sample), and it looks as though it's stalled at the 'Processing Loci' step with 98% of the memory being used. This is our first attempt at usi ...
written 4.8 years ago by eb090610
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Hardware requirements for NGS analysis
... Our small bioinformatics core bought two Dell Precision T7610 Tower Workstations equipped with 1 Intel Xeon E5-2687W v2 Eight-core 3.4 GHz Turbo, 25 MB processor, 64 GB 1866MHz DDR3 RAM, 1GB NVIDIA Quadro K600 Video card, 256 GB Solid-state drive and two 1TB SATA drives, DVD-RW drive, 10Gb Network a ...
next-gen alignment chip-seq rna-seq written 4.8 years ago by eb090610 • updated 3.2 years ago by Biostar ♦♦ 20
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Comment: C: GD::Graph install 'make' failure in Cygwin
... Thanks, I will try Perl Monks instead. New user here… And, no, force install GD::Graph does not work. $ cpan > force install GD::Graph Unable to close logo file 't/images/logo.gif': at t/bugfixes.t line 42 Looks like you planned 33 tests but ran 3. Looks like your test exited with 255 just af ...
written 4.8 years ago by eb090610
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Comment: C: GD::Graph install 'make' failure in Cygwin
... Good morning, Perhaps I should have been more specific in my question. I’m actually trying to install Fastq Screen, a sequencing pipeline tool that checks your sequences for contaminants and non-target sequences. GD::Graph is one of the [optional] requirements to visualize sequence hits. I am tryin ...
written 4.8 years ago by eb090610
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(Closed) GD::Graph install 'make' failure in Cygwin
... I am trying to install GD::Graph in Cygwin using cpan and 'make' keeps failing. I have been trying to troubleshoot this for a few days with no success. Any thoughts? Thanks in advance. $ cpan install GD::Graph Going to read '/home/xxx/.cpan/Metadata' Database was generated on Mon, 29 Dec 2014 12:41 ...
perl cygwin cpan gd::graph written 4.8 years ago by eb090610 • updated 4.8 years ago by RamRS24k

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