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Answer: Answer: GSEA on non-model organisms: How to handle duplicated KEGG KO
17 days ago by alserg ▴ 920
3
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2
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548
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Answer: Answer: Help in choosing the right metric for ranking genes in fgsea
3 months ago by alserg ▴ 920
2
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2
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991
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Answer: Answer: Ties in reranked list
7 months ago by alserg ▴ 920
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2.3k
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Answer: Answer: collapsePathways function throwing error
13 months ago by alserg ▴ 920
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0
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567
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Answer: Answer: how to convert kegg ids to gene names
19 months ago by alserg ▴ 920
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1.8k
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Answer: Answer: fgsea resulting in an empty datafram
22 months ago by alserg ▴ 920
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1
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816
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Answer: Answer: Finding differential subpathways of metabolic networks using RNA-seq data
2.4 years ago by alserg ▴ 920
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0
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3.1k
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Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
3.2 years ago by alserg ▴ 920
6
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1
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4.3k
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Answer: A: fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
3.3 years ago by alserg ▴ 920
2
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1
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2.9k
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Answer: A: optimal size of gene sets for fgsea analysis
3.7 years ago by alserg ▴ 920
8
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1
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3.9k
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Answer: A: fgsea nMoreExtreme meaning
updated 3.9 years ago by 81k • written 3.9 years ago by ▴ 920
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1.7k
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Answer: A: GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
4.2 years ago by alserg ▴ 920
6
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2
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8.6k
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Answer: A: GSEA PreRanked lists from DESeq2 results table
4.2 years ago by alserg ▴ 920
6
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1
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3.6k
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Answer: A: fGSEA result to csv
4.4 years ago by alserg ▴ 920
1
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1
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4.1k
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Answer: A: Thousands of significant differentially expressed genes but no significant enric
4.4 years ago by alserg ▴ 920
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0
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4.4k
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Answer: A: Getting all gene members in a Reactome Pathway
4.7 years ago by alserg ▴ 920
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0
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2.3k
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Answer: A: PCA on RNAseq time series data
4.7 years ago by alserg ▴ 920
4
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1
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4.4k
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Answer: A: Need help choosing genes and calculating ranks for GSEA rank file
4.8 years ago by alserg ▴ 920
0
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0
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1.8k
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Answer: A: Max/min value of enrichment score
4.8 years ago by alserg ▴ 920
1
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0
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1.6k
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Answer: A: Preranked GSEA statistics
4.9 years ago by alserg ▴ 920
0
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1
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2.6k
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Answer: A: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
5.1 years ago by alserg ▴ 920
1
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1
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1.4k
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Answer: A: Pathway test for reversal of effect (three-condition comparison)
5.7 years ago by alserg ▴ 920
3
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0
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1.2k
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Answer: A: Is there a name for these charts?
6.1 years ago by alserg ▴ 920
1
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0
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5.7k
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Answer: A: Cut-off for genesets in GSEA
6.4 years ago by alserg ▴ 920
3
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0
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4.9k
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Answer: A: How to handle the 'Inf' and '-Inf' in cufflinks output when use clusterprofiler
6.5 years ago by alserg ▴ 920
1
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0
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5.2k
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Answer: A: Input all the ranked genes into pre-ranked GSEA?
6.8 years ago by alserg ▴ 920
1
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1
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4.7k
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Answer: A: How do I obtain germline mutation for TCGA samples?
6.9 years ago by alserg ▴ 920
3
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1
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5.2k
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Answer: A: How to view all KEGG reactions?
7.2 years ago by alserg ▴ 920
0
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0
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3.5k
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Answer: A: GSEA genesets postiively enriched in positive phenotype are necessarily negative
7.5 years ago by alserg ▴ 920
0
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1
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4.4k
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Answer: A: Trimming redundant gene sets after gsea analysis
7.5 years ago by alserg ▴ 920
2
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3
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5.9k
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Answer: A: Simplest way to perform GSEA from a weighted list of entrez gene ids
7.8 years ago by alserg ▴ 920
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