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3
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0
replies
1.5k
views
Answer: Answer: Manipulating a fasta file to only have specific characters
updated 6 months ago by 43k • written 3.4 years ago by ★ 4.3k
2
votes
1
reply
908
views
Answer: A: Running a code in batch mode on a list of files
3.7 years ago by zizigolu ★ 4.3k
1
vote
0
replies
1.1k
views
Answer: A: Making a legoplot of mutational signatures
3.7 years ago by zizigolu ★ 4.3k
3
votes
1
reply
12k
views
Answer: Answer: How to interpret variant allele frequency?
3.7 years ago by zizigolu ★ 4.3k
3
votes
2
replies
4.7k
views
Answer: C: Interpreting ASCAT CNV output
3.9 years ago by zizigolu ★ 4.3k
2
votes
0
replies
3.3k
views
Answer: A: troubleshooting bowtie2 low mapping rates
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 4.3k
1
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0
replies
6.9k
views
Answer: A: list of gene or transcript IDs and their length
updated 4.3 years ago by 43k • written 8.3 years ago by ★ 4.3k
1
vote
2
replies
4.0k
views
Answer: A: variance stabilization and normalization
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 4.3k
1
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1
reply
6.0k
views
Answer: Answer: couting rpkm by edgr package
updated 20 months ago by 43k • written 8.4 years ago by ★ 4.3k
0
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1
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2.6k
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Answer: A: methods of integrating microarray data and RNAseq data
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 4.3k
2
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0
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5.5k
views
Answer: A: using featureCounts to have raw counts of the reads
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 4.3k
1
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2
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1.1k
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Answer: A: Getting RNA expression from TCGA only for these patients IDs
4.4 years ago by zizigolu ★ 4.3k
2
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0
replies
2.0k
views
Answer: A: How I do this at the same time in linux?
4.5 years ago by zizigolu ★ 4.3k
1
vote
1
reply
783
views
Answer: A: Summing up prob level
4.5 years ago by zizigolu ★ 4.3k
3
votes
1
reply
1.9k
views
Answer: C: What is the state of the art in gene set analysis in 2019?
4.6 years ago by zizigolu ★ 4.3k
1
vote
0
replies
4.1k
views
Answer: A: error in running R
updated 4.8 years ago by 43k • written 8.3 years ago by ★ 4.3k
2
votes
0
replies
2.5k
views
Answer: A: Creating marker file for GICTIC2
updated 5.0 years ago by 43k • written 5.0 years ago by ★ 4.3k
1
vote
2
replies
4.1k
views
Answer: A: Getting the number of SNPs in some ranges
updated 5.0 years ago by 43k • written 5.0 years ago by ★ 4.3k
5
votes
0
replies
16k
views
Answer: A: R - removing column names from matrix
updated 5.0 years ago by 43k • written 8.2 years ago by ★ 4.3k
1
vote
0
replies
3.2k
views
Answer: A: Problem with .vcf annovar
5.0 years ago by zizigolu ★ 4.3k
3
votes
1
reply
3.3k
views
Answer: C: Extracting this data frame from a .vcf file
5.1 years ago by zizigolu ★ 4.3k
1
vote
0
replies
1.5k
views
Answer: A: Extracting information from gatk VariantFiltration output
5.1 years ago by zizigolu ★ 4.3k
0
votes
0
replies
1.8k
views
Answer: A: picard not working whatever I am trying
5.1 years ago by zizigolu ★ 4.3k
1
vote
0
replies
2.4k
views
Answer: A: Getting these files from different parts of genome
5.2 years ago by zizigolu ★ 4.3k
2
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1
reply
2.4k
views
Answer: C: Getting these files from different parts of genome
5.2 years ago by zizigolu ★ 4.3k
3
votes
1
reply
1.0k
views
Answer: C: network visualization (multiple data source integration)
5.2 years ago by zizigolu ★ 4.3k
2
votes
0
replies
1.0k
views
Answer: C: Gene interaction and network analysis tools
5.2 years ago by zizigolu ★ 4.3k
3
votes
1
reply
4.6k
views
Answer: C: Construction of the coexpression network
5.2 years ago by zizigolu ★ 4.3k
1
vote
0
replies
3.3k
views
Answer: C: RNA-seq visualization tools
6.7 years ago by zizigolu ★ 4.3k
1
vote
2
replies
1.6k
views
Answer: A: extracting targe genes of a list of TFs
7.2 years ago by zizigolu ★ 4.3k
0
votes
0
replies
3.0k
views
Answer: A: miRNA Target database?
7.2 years ago by zizigolu ★ 4.3k
1
vote
0
replies
1.9k
views
Answer: A: why mirnakey can't find bwa
7.5 years ago by zizigolu ★ 4.3k
0
votes
0
replies
5.2k
views
Answer: A: mireap procedure short tutorial
7.6 years ago by zizigolu ★ 4.3k
2
votes
0
replies
1.8k
views
Answer: A: getting sequence for a list of miRNAs
7.6 years ago by zizigolu ★ 4.3k
2
votes
0
replies
2.3k
views
Answer: A: error in mirdeep2 mapper
7.6 years ago by zizigolu ★ 4.3k
1
vote
0
replies
3.1k
views
Answer: A: why the featurecounts result is empty
7.6 years ago by zizigolu ★ 4.3k
1
vote
1
reply
1.7k
views
Answer: A: getting miRBase microRNAs gff Aspergillus fumigatus
7.6 years ago by zizigolu ★ 4.3k
1
vote
0
replies
1.8k
views
Answer: A: getting gene functions for a group of genes
7.8 years ago by zizigolu ★ 4.3k
1
vote
0
replies
2.1k
views
Answer: A: error in installing package RCy3
8.0 years ago by zizigolu ★ 4.3k
1
vote
0
replies
2.4k
views
Answer: Answer: Differential expressed genes in cuffdiff
updated 21 months ago by 43k • written 8.2 years ago by ★ 4.3k
1
vote
0
replies
1.0k
views
Answer: Answer: relating the number with gene names in a list of genes
updated 21 months ago by 43k • written 8.2 years ago by ★ 4.3k
1
vote
0
replies
1.8k
views
Answer: Answer: launching aracne from java GUI
updated 16 months ago by 43k • written 8.7 years ago by ★ 4.3k
0
votes
0
replies
1.4k
views
Answer: A: Find whole protein sequences for a spiece
8.6 years ago by zizigolu ★ 4.3k
3
votes
1
reply
19k
views
Answer: Answer: using featureCounts in command line
updated 21 months ago by 43k • written 8.6 years ago by ★ 4.3k
1
vote
0
replies
4.6k
views
Answer: A: why is my txt file empty ?
8.6 years ago by zizigolu ★ 4.3k
1
vote
1
reply
1.7k
views
Answer: Answer: getting reference for indexing the transcriptom needed for tophat2
updated 19 months ago by 43k • written 8.6 years ago by ★ 4.3k
0
votes
0
replies
2.0k
views
Answer: Answer: Tool to access to protein-protein exact interactions domains
updated 18 months ago by 43k • written 8.7 years ago by ★ 4.3k
2
votes
0
replies
2.9k
views
Answer: Answer: tools for identifying mitochondrial-targeting sequence in different proteins
updated 17 months ago by 43k • written 8.7 years ago by ★ 4.3k
1
vote
0
replies
1.4k
views
Answer: A: getting probes by gene name
8.7 years ago by zizigolu ★ 4.3k
2
votes
0
replies
1.2k
views
Answer: Answer: blastn for matching small sequences
updated 17 months ago by 43k • written 8.7 years ago by ★ 4.3k
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