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207
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Manta <DUP:TANDEM> interpretation
structural
updated 10 days ago by 165k • written 10 days ago by ▴ 580
0
votes
0
replies
276
views
How VEP BAM Edit works?
variant VEP
8 months ago by bharata1803 ▴ 580
0
votes
1
reply
479
views
VEP fail to annotate NCBI refseq GFF
VEP variant
12 months ago by bharata1803 ▴ 580
0
votes
6
replies
2.5k
views
Samtools variant caller for each individual sample
variant calling SNP samtools sequence
updated 4.4 years ago by 20 • written 8.1 years ago by ▴ 580
0
votes
1
reply
2.1k
views
Samview from bam file aligned to cDNA reference
RNA-Seq sam bam
updated 4.8 years ago by 20 • written 8.9 years ago by ▴ 580
0
votes
3
replies
2.0k
views
CAGEFightR to get CTSS from CAGE error
cage-seq bioconductor
updated 5.2 years ago by • 0 • written 6.3 years ago by ▴ 580
4
votes
5
replies
4.9k
views
Around 3 months short course or summer school in Bioinformatics
courses workshop
written 9.0 years ago by ▴ 580
7
votes
3
replies
8.0k
views
Salmon tximport get TPM
RNA-Seq Salmon
5.6 years ago by bharata1803 ▴ 580
0
votes
4
replies
1.2k
views
Finding similarities of 2 independent samples
RNA-Seq
updated 5.6 years ago by 20 • written 5.7 years ago by ▴ 580
0
votes
4
replies
1.4k
views
Extracting important gene with similar expression level from multiple samples
RNA-Seq clustering feature extraction
updated 5.6 years ago by ▴ 710 • written 5.6 years ago by ▴ 580
0
votes
2
replies
2.7k
views
FIMO score calculation
fimo PWM
updated 5.7 years ago by • 0 • written 7.1 years ago by ▴ 580
0
votes
0
replies
1.8k
views
Fastq-dump error time exhausted
fastq RNA-Seq ncbi
5.8 years ago by bharata1803 ▴ 580
0
votes
0
replies
898
views
DE genes effect in regulatory network for time course data
RNA-Seq deseq2 grn
5.8 years ago by bharata1803 ▴ 580
0
votes
1
reply
1.5k
views
Differential expression analysis for time course data
RNA-Seq DESeq2
6.0 years ago by bharata1803 ▴ 580
0
votes
2
replies
3.8k
views
Getting raw FASTQ file from GDC/TCGA database
RNA-Seq next-gen
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 580
0
votes
2
replies
1.7k
views
Subread and featurecounts read index and annotation once for all
RNA-Seq alignment featurecounts
updated 6.1 years ago by 20 • written 6.3 years ago by ▴ 580
0
votes
0
replies
1.7k
views
FIMO parameter for PWM motif scanning
fimo pwm
6.2 years ago by bharata1803 ▴ 580
0
votes
20
replies
4.4k
views
FASTQ alignment result is really bad
RNA-Seq htseq-count salmon
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 580
0
votes
0
replies
2.0k
views
FANTOM5 CAGE data to get promoter region
fantom5 cage-seq
6.3 years ago by bharata1803 ▴ 580
2
votes
2
replies
2.8k
views
Filtering low count when using Tximport from Salmon to DESeq2
deseq2 RNA-Seq
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 580
5
votes
8
replies
2.9k
views
Transcript differential exprs analysis using Kallisto not significant
RNA-Seq
updated 6.4 years ago by ★ 4.1k • written 6.4 years ago by ▴ 580
3
votes
0
replies
2.4k
views
Kallisto estimated sd and fragment length
RNA-Seq kallisto alignment
6.4 years ago by bharata1803 ▴ 580
1
vote
1
reply
4.5k
views
Bedtools with name and full header
bed
updated 6.4 years ago by 20 • written 9.0 years ago by ▴ 580
0
votes
5
replies
1.5k
views
Bioinformatics conference with possible publication
conference
updated 22 months ago by 45k • written 6.5 years ago by ▴ 580
2
votes
3
replies
3.8k
views
GATK dbSNP for Ensembl
Ensembl snp gatk
updated 2.1 years ago by 45k • written 9.8 years ago by ▴ 580
0
votes
5
replies
2.4k
views
Bismark duplicate ID error
RRBS Bismark
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 580
1
vote
5
replies
6.7k
views
VCF file period symbol in the genotype
variant VCF SNP
updated 6.5 years ago by 45k • written 8.0 years ago by ▴ 580
2
votes
4
replies
3.5k
views
Salmon choosing library type
salmon alignment
updated 6.7 years ago by 13k • written 6.7 years ago by ▴ 580
5
votes
3
replies
5.8k
views
Map gene list to pathway and visualize it
kegg
updated 6.8 years ago by ▴ 370 • written 9.3 years ago by ▴ 580
1
vote
3
replies
2.3k
views
KEGG pathway per genes relation
kegg
updated 7.2 years ago by 20 • written 9.2 years ago by ▴ 580
1
vote
7
replies
6.5k
views
Enrichment analysis for custom set
gene-ontology enrichment
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by ▴ 580
2
votes
3
replies
2.8k
views
Comparing DEG result from different experiment
RNA-Seq deg
7.3 years ago by bharata1803 ▴ 580
1
vote
2
replies
1.4k
views
Comparison of Subsetting gene sets for enrichment analysis
enrichment RNA-Seq
7.3 years ago by bharata1803 ▴ 580
1
vote
2
replies
2.0k
views
GDC data only cancer sample without normal sample
RNA-Seq TCGA
updated 7.3 years ago by ▴ 100 • written 8.0 years ago by ▴ 580
2
votes
6
replies
2.2k
views
Getting interesting gene ontology analysis result
GO ensembl
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 580
2
votes
7
replies
2.5k
views
Interpretation of DE gene and mutation in normal/cancer sample
SNP genome gene
updated 2.2 years ago by 45k • written 9.8 years ago by ▴ 580
0
votes
4
replies
2.7k
views
Sample clustering from TCGA dataset
RNA-Seq deseq2
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 580
0
votes
0
replies
1.5k
views
Transfac database BF tag meaning
transcfac
updated 7.8 years ago by 20 • written 7.9 years ago by ▴ 580
4
votes
6
replies
3.2k
views
Filtering the result of transcription factor binding matrix prediction from PWM with FIMO software
transcription binding matrix
updated 7.9 years ago by ★ 2.8k • written 7.9 years ago by ▴ 580
8
votes
1
reply
10.0k
views
VCF file PL values for more than 1 alternatives allele
SNP indel vcf
updated 7.9 years ago by 5.8k • written 7.9 years ago by ▴ 580
0
votes
8
replies
2.0k
views
Variant consensus sequence generator
SNP indel bcftools
7.9 years ago by bharata1803 ▴ 580
0
votes
0
replies
1.6k
views
Transcript consensus sequence for variant calling analysis
sequencing exome-seq
8.1 years ago by bharata1803 ▴ 580
0
votes
1
reply
2.4k
views
Error in plot-vcfstats
samtools bcftools
updated 3.6 years ago by ▴ 270 • written 8.1 years ago by ▴ 580
4
votes
6
replies
4.4k
views
Tools to analyze protein sequence if mutation occur
sequence alignment
updated 8.1 years ago by 18k • written 8.1 years ago by ▴ 580
5
votes
2
replies
2.7k
views
miRNA binding detection from RNA-seq reads
rna-seq micro-rna
updated 8.2 years ago by ▴ 610 • written 8.8 years ago by ▴ 580
0
votes
1
reply
3.9k
views
PPM, PSSM, and PWM
sequence
updated 8.3 years ago by 5.8k • written 8.3 years ago by ▴ 580
0
votes
6
replies
2.9k
views
Ensembl regulatory build promoter region and gene name
promoter fasta
updated 8.5 years ago by 105k • written 8.5 years ago by ▴ 580
2
votes
2
replies
2.0k
views
Workshop or training related to Bioinformatics
workshop training
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 580
0
votes
1
reply
2.3k
views
Is there any paper about motif finding based on PWM on genome sequence?
sequence PWM transcription factor
8.7 years ago by bharata1803 ▴ 580
4
votes
8
replies
9.0k
views
Download transfac public database
transcription factor transfac
updated 8.7 years ago by ▴ 440 • written 8.7 years ago by ▴ 580
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