User: Michel Edwar

gravatar for Michel Edwar
Michel Edwar40
Reputation:
40
Status:
New User
Location:
Sweden
Last seen:
10 months, 3 weeks ago
Joined:
3 years, 8 months ago
Email:
m*************@gmail.com

Posts by Michel Edwar

<prev • 18 results • page 1 of 2 • next >
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how to calculate gene probability from gene expression matrix
... i have an expression table like this sample1 sample 2 sample3 gene1 x1 x2 x3 gene2 y1 y2 y3 gene3 z1 z2 z3 how can i calculate the probability of gene 1 ? thanks ...
microarray rna-seq written 10 months ago by Michel Edwar40 • updated 10 months ago by Kevin Blighe28k
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how to normalize microarray expression set
... I have downloaded a database from GEO using getGEO and then converted it into ExpressionSets using GDS2eSet. Now I am trying to normalize it using rma. It gives me error :unable to find an inherited method for function ‘probeNames’ for signature ‘"ExpressionSet". Which function I showed use to norm ...
gds getgeo rma written 11 months ago by Michel Edwar40 • updated 11 months ago by e.rempel700
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Answer: A: I can not see BAM file in IGV
... I tried sorting and then indexing and now it is working samtools sort A.bam -o B.bam samtools index B.bam Thanks ...
written 15 months ago by Michel Edwar40 • updated 15 months ago by WouterDeCoster32k
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Comment: C: I can not see BAM file in IGV
... The version is I.G.V_2.3.93 I have tried chr10:65,266,569-65,287,741 ...
written 15 months ago by Michel Edwar40
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I can not see BAM file in IGV
... I have uploaded a bam file with index into IGV and I only see the reference gene but not my actual bam file. when i try to zoom in , I get this error message. Error encountered querying alignments: java.lang.IllegalArgumentException: Size exceeds Integer.MAX_VALUE I have tried using sam tools to v ...
methylation igv written 15 months ago by Michel Edwar40
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is there a program to predict homophilic vs heterophilic binding of proteins
... I have a protein sequence, and I want to determine if it has homophilic or heterophilic binding abilities  ...
binding protein written 2.7 years ago by Michel Edwar40 • updated 2.7 years ago by jr12140
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how can you say if two orthologous proteins belong to the same family
... If there are  two orthologous sequences from two different species. Does that necessarily mean , they belong to the same family?  thanks   ...
phylogenetics evolution written 2.7 years ago by Michel Edwar40
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How to calculate 4DTv distance (D4DTv) that stands for fourfold synonymous third-codon transversion ?
... Hi Guys, I have a multiple sequence alignment and I need to calculate 4DTv distance (D4DTv) that stands for fourfold synonymous third-codon transversion. I wonder if there is a program which can calculate it or a function in R ? Thanks   ...
gene codon written 2.8 years ago by Michel Edwar40
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Comment: C: does the best substitution model for a phylogeny tree differ between one method
... but in MAFFT server, you can identify one of three substitution models for neighbor  joining method. [Substitution model (valid when NJ is selected):   JTT   WAG Alpha   Poisson] ...
written 3.3 years ago by Michel Edwar40
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Does PAML (codeml ) analysis include the introns or it correspond only to the CDS ?
... I have done a phylogeny tree using protein sequences. Now i want to measure dn/ds on several branches. If i want to work on the nucleotide  level, can i do the analysis using the corresponding coding region only or do i need to include the introns as well ?         ...
introns paml written 3.3 years ago by Michel Edwar40 • updated 3.3 years ago by h.mon19k

Latest awards to Michel Edwar

Popular Question 15 months ago, created a question with more than 1,000 views. For ProtTest and PhyML
Scholar 15 months ago, created an answer that has been accepted. For A: I can not see BAM file in IGV

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