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comments
0
votes
7
replies
516
views
Snippy does not find SNPs I know are present
snippy-multi
snippy
snps
updated 6 weeks ago by
Michael
55k • written 6 weeks ago by
blur
▴ 280
0
votes
1
reply
516
views
Comment:
Comment: Snippy does not find SNPs I know are present
updated 6 weeks ago by
GenoMax
147k • written 6 weeks ago by
blur
▴ 280
0
votes
1
reply
516
views
Comment:
Comment: Snippy does not find SNPs I know are present
updated 6 weeks ago by
GenoMax
147k • written 6 weeks ago by
blur
▴ 280
0
votes
1
reply
516
views
Comment:
Comment: Snippy does not find SNPs I know are present
6 weeks ago by
blur
▴ 280
0
votes
0
replies
342
views
Comment:
Comment: What tool is best to build plasmid using a reference sequence?
3 months ago by
blur
▴ 280
2
votes
2
replies
342
views
What tool is best to build plasmid using a reference sequence?
assembly
reference
WGS
3 months ago by
blur
▴ 280
0
votes
0
replies
146
views
Problem evaluating chewBBACA schema
schema
chewBBACA
3 months ago by
blur
▴ 280
1
vote
1
reply
281
views
best tools for bacterial wgMLST
wgMLST
updated 4 months ago by
Mark
★ 1.6k • written 4 months ago by
blur
▴ 280
0
votes
0
replies
208
views
Is there a good tool/reference for PBP and porin analysis
PBP
porin
7 months ago by
blur
▴ 280
2
votes
1
reply
896
views
snippy error
snippy
updated 9 months ago by
cfos4698
★ 1.1k • written 9 months ago by
blur
▴ 280
0
votes
0
replies
403
views
Minimum spanning tree based on cgMLST allelic profiles
cgMLST
spanning
Minimum
tree
12 months ago by
blur
▴ 280
0
votes
1
reply
385
views
Is there a capsule typing tool for pseudomonas? (Like KAPTIVE for Kelbsiella)
pseudomonas
capsule
kaptive
updated 15 months ago by
GenoMax
147k • written 15 months ago by
blur
▴ 280
0
votes
0
replies
322
views
Where can I find a adegenet tutorial/workshop for beginners?
minimum-spanning-tree
adegenet
updated 16 months ago by
Ram
44k • written 16 months ago by
blur
▴ 280
0
votes
0
replies
632
views
Comment:
Comment: Visualizing several genomes/plasmids in a single figure
17 months ago by
blur
▴ 280
0
votes
2
replies
632
views
Visualizing several genomes/plasmids in a single figure
visualization
17 months ago by
blur
▴ 280
3
votes
2
replies
1.0k
views
Metadata for assemblies deposited in NCBI
ncbi
metadata
assembly
updated 20 months ago by
MirianT_NCBI
▴ 760 • written 20 months ago by
blur
▴ 280
0
votes
1
reply
1.2k
views
Comment:
Comment: Predicting protein fold using known stracture
22 months ago by
blur
▴ 280
2
votes
6
replies
1.2k
views
Predicting protein fold using known stracture
protein
modeller
prediction
3D
updated 22 months ago by
Michael
55k • written 22 months ago by
blur
▴ 280
1
vote
1
reply
581
views
Where can I get a fasta reference for all mob/rep genes?
mob
plasmids
rep
updated 23 months ago by
bas1993
▴ 60 • written 23 months ago by
blur
▴ 280
0
votes
0
replies
430
views
snp-dists numbers don't add up
snp
snp-dists
23 months ago by
blur
▴ 280
1
vote
1
reply
702
views
What is the best tool/wrokflow for a core SNP alignment?
Gubbins
snp-sites
SNP-detector
snippy
SNP
updated 2.0 years ago by
Michael
55k • written 2.0 years ago by
blur
▴ 280
0
votes
0
replies
844
views
Comment:
Comment: How do I download all genomes with specific ST type from ncbi
2.1 years ago by
blur
▴ 280
4
votes
3
replies
844
views
How do I download all genomes with specific ST type from ncbi
ncbi
2.1 years ago by
blur
▴ 280
0
votes
0
replies
1.2k
views
Comment:
Comment: setting overlap in DADA2 in qiime2
2.3 years ago by
blur
▴ 280
0
votes
2
replies
1.2k
views
setting overlap in DADA2 in qiime2
dada2
qiime
qiime2
2.3 years ago by
blur
▴ 280
0
votes
1
reply
1.9k
views
Comment:
Comment: ANI for inter-species analysis and genome tree phylogeny
2.9 years ago by
blur
▴ 280
0
votes
2
replies
1.9k
views
Comment:
Comment: ANI for inter-species analysis and genome tree phylogeny
2.9 years ago by
blur
▴ 280
0
votes
6
replies
1.9k
views
ANI for inter-species analysis and genome tree phylogeny
ANI
Identity
Nucleotide
Average
updated 2.9 years ago by
5heikki
11k • written 2.9 years ago by
blur
▴ 280
0
votes
0
replies
435
views
Can you use easyFig to visualize a single genome?
easyfig
2.9 years ago by
blur
▴ 280
0
votes
0
replies
640
views
Problem aligning ggtree circular tree labels to right angles
fan
circular
ggtree
3.1 years ago by
blur
▴ 280
1
vote
1
reply
8.3k
views
Comment:
Comment: Can't locate Bio/SeqIO.pm - path error?
3.1 years ago by
blur
▴ 280
6
votes
4
replies
8.3k
views
Can't locate Bio/SeqIO.pm - path error?
bioperl
updated 15 months ago by
schlogl
▴ 160 • written 3.2 years ago by
blur
▴ 280
0
votes
0
replies
1.1k
views
Comment:
Comment: Bioinformatic tool for acinetobacter plasmids
3.3 years ago by
blur
▴ 280
1
vote
2
replies
1.1k
views
Bioinformatic tool for acinetobacter plasmids
plasmidseeker
plasmidfinder
plasmid
3.3 years ago by
blur
▴ 280
1
vote
0
replies
999
views
QIIME2 quality control
control
dada2
quality
qiime2
3.4 years ago by
blur
▴ 280
0
votes
0
replies
2.2k
views
Comment:
Comment: PROKKA annotation problem - wrong reference?
3.5 years ago by
blur
▴ 280
0
votes
1
reply
2.2k
views
Comment:
Comment: PROKKA annotation problem - wrong reference?
3.5 years ago by
blur
▴ 280
2
votes
4
replies
2.2k
views
PROKKA annotation problem - wrong reference?
prokka
annotation
3.5 years ago by
blur
▴ 280
2
votes
2
replies
1.0k
views
Problem setting blastdb in linux
blastdb
blastall
updated 3.5 years ago by
Mensur Dlakic
★ 28k • written 3.5 years ago by
blur
▴ 280
0
votes
0
replies
500
views
Creating phylogenetic trees for a full genome at once?
genomic
Phylogeny
3.5 years ago by
blur
▴ 280
0
votes
0
replies
516
views
Measuring diffeences in specific OUTs instead of full smaples in quiime2
OTU
quiime2
3.6 years ago by
blur
▴ 280
2
votes
4
replies
2.2k
views
Where can I find a fasta for mitochondrial genes?
mitochondrial
genes
updated 3.6 years ago by
Jorge Amigo
14k • written 3.6 years ago by
blur
▴ 280
2
votes
4
replies
2.0k
views
HTSeq counts gives zero when I can see the reads in the BAM file
htseq
htseq-counts
3.7 years ago by
blur
▴ 280
0
votes
0
replies
2.0k
views
Answer:
A: HTSeq counts gives zero when I can see the reads in the BAM file
3.7 years ago by
blur
▴ 280
0
votes
0
replies
552
views
mitochondrial tRNA secondary stracture / model fold
trnas
mitochondria
stracture
3.7 years ago by
blur
▴ 280
0
votes
0
replies
551
views
exomePeak for non-fragmented libraries
exomePeak
3.7 years ago by
blur
▴ 280
0
votes
0
replies
4.5k
views
Comment:
C: bowtie2 --un vs --un-conc
3.8 years ago by
blur
▴ 280
4
votes
2
replies
4.5k
views
bowtie2 --un vs --un-conc
bowtie2
updated 3.8 years ago by
Carlo Yague
8.9k • written 3.8 years ago by
blur
▴ 280
0
votes
0
replies
1.7k
views
Comment:
C: how Creat un-aligne file with bowtie?
3.8 years ago by
blur
▴ 280
0
votes
1
reply
1.9k
views
Comment:
C: Riboseq - pairs unaligned to rRNA get mixed up
3.8 years ago by
blur
▴ 280
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