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4
votes
4
replies
1.0k
views
SNP calling ONT sequenced files
ONT SNPs
updated 25 days ago by ▴ 10 • written 4 weeks ago by ▴ 280
0
votes
0
replies
394
views
Can checkM do automatic genus identification?
checkM
10 months ago by blur ▴ 280
0
votes
7
replies
2.5k
views
Snippy does not find SNPs I know are present
snippy-multi snippy snps
updated 13 months ago by 56k • written 13 months ago by ▴ 280
0
votes
1
reply
2.5k
views
Comment: Comment: Snippy does not find SNPs I know are present
updated 13 months ago by 154k • written 13 months ago by ▴ 280
0
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1
reply
2.5k
views
Comment: Comment: Snippy does not find SNPs I know are present
updated 13 months ago by 154k • written 13 months ago by ▴ 280
0
votes
1
reply
2.5k
views
Comment: Comment: Snippy does not find SNPs I know are present
13 months ago by blur ▴ 280
0
votes
0
replies
824
views
Comment: Comment: What tool is best to build plasmid using a reference sequence?
15 months ago by blur ▴ 280
2
votes
2
replies
824
views
What tool is best to build plasmid using a reference sequence?
assembly reference WGS
15 months ago by blur ▴ 280
0
votes
0
replies
386
views
Problem evaluating chewBBACA schema
schema chewBBACA
16 months ago by blur ▴ 280
1
vote
1
reply
613
views
best tools for bacterial wgMLST
wgMLST
updated 16 months ago by ★ 1.7k • written 16 months ago by ▴ 280
0
votes
0
replies
394
views
Is there a good tool/reference for PBP and porin analysis
PBP porin
19 months ago by blur ▴ 280
2
votes
1
reply
1.8k
views
snippy error
snippy
updated 21 months ago by ★ 1.2k • written 21 months ago by ▴ 280
0
votes
0
replies
684
views
Minimum spanning tree based on cgMLST allelic profiles
cgMLST spanning Minimum tree
2.1 years ago by blur ▴ 280
0
votes
1
reply
682
views
Is there a capsule typing tool for pseudomonas? (Like KAPTIVE for Kelbsiella)
pseudomonas capsule kaptive
updated 2.3 years ago by 154k • written 2.3 years ago by ▴ 280
0
votes
0
replies
523
views
Where can I find a adegenet tutorial/workshop for beginners?
minimum-spanning-tree adegenet
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 280
0
votes
0
replies
1.0k
views
Comment: Comment: Visualizing several genomes/plasmids in a single figure
2.4 years ago by blur ▴ 280
0
votes
2
replies
1.0k
views
Visualizing several genomes/plasmids in a single figure
visualization
2.4 years ago by blur ▴ 280
3
votes
2
replies
1.7k
views
Metadata for assemblies deposited in NCBI
ncbi metadata assembly
updated 2.7 years ago by ▴ 800 • written 2.7 years ago by ▴ 280
0
votes
1
reply
1.9k
views
Comment: Comment: Predicting protein fold using known stracture
2.8 years ago by blur ▴ 280
2
votes
6
replies
1.9k
views
Predicting protein fold using known stracture
protein modeller prediction 3D
updated 2.8 years ago by 56k • written 2.8 years ago by ▴ 280
1
vote
1
reply
904
views
Where can I get a fasta reference for all mob/rep genes?
mob plasmids rep
updated 2.9 years ago by ▴ 60 • written 2.9 years ago by ▴ 280
0
votes
0
replies
624
views
snp-dists numbers don't add up
snp snp-dists
3.0 years ago by blur ▴ 280
1
vote
1
reply
988
views
What is the best tool/wrokflow for a core SNP alignment?
Gubbins snp-sites SNP-detector snippy SNP
updated 3.0 years ago by 56k • written 3.0 years ago by ▴ 280
0
votes
0
replies
1.4k
views
Comment: Comment: How do I download all genomes with specific ST type from ncbi
3.1 years ago by blur ▴ 280
4
votes
3
replies
1.4k
views
How do I download all genomes with specific ST type from ncbi
ncbi
3.1 years ago by blur ▴ 280
0
votes
0
replies
1.7k
views
Comment: Comment: setting overlap in DADA2 in qiime2
3.3 years ago by blur ▴ 280
0
votes
2
replies
1.7k
views
setting overlap in DADA2 in qiime2
dada2 qiime qiime2
3.3 years ago by blur ▴ 280
0
votes
1
reply
2.8k
views
Comment: Comment: ANI for inter-species analysis and genome tree phylogeny
3.9 years ago by blur ▴ 280
0
votes
2
replies
2.8k
views
Comment: Comment: ANI for inter-species analysis and genome tree phylogeny
3.9 years ago by blur ▴ 280
0
votes
6
replies
2.8k
views
ANI for inter-species analysis and genome tree phylogeny
ANI Identity Nucleotide Average
updated 3.9 years ago by 11k • written 3.9 years ago by ▴ 280
0
votes
0
replies
581
views
Can you use easyFig to visualize a single genome?
easyfig
3.9 years ago by blur ▴ 280
0
votes
0
replies
907
views
Problem aligning ggtree circular tree labels to right angles
fan circular ggtree
4.1 years ago by blur ▴ 280
1
vote
1
reply
11k
views
Comment: Comment: Can't locate Bio/SeqIO.pm - path error?
4.1 years ago by blur ▴ 280
6
votes
4
replies
11k
views
Can't locate Bio/SeqIO.pm - path error?
bioperl
updated 2.3 years ago by ▴ 180 • written 4.2 years ago by ▴ 280
0
votes
0
replies
1.5k
views
Comment: Comment: Bioinformatic tool for acinetobacter plasmids
4.3 years ago by blur ▴ 280
1
vote
2
replies
1.5k
views
Bioinformatic tool for acinetobacter plasmids
plasmidseeker plasmidfinder plasmid
4.3 years ago by blur ▴ 280
1
vote
0
replies
1.3k
views
QIIME2 quality control
control dada2 quality qiime2
4.4 years ago by blur ▴ 280
0
votes
0
replies
3.1k
views
Comment: Comment: PROKKA annotation problem - wrong reference?
4.5 years ago by blur ▴ 280
0
votes
1
reply
3.1k
views
Comment: Comment: PROKKA annotation problem - wrong reference?
4.5 years ago by blur ▴ 280
2
votes
4
replies
3.1k
views
PROKKA annotation problem - wrong reference?
prokka annotation
4.5 years ago by blur ▴ 280
2
votes
2
replies
1.4k
views
Problem setting blastdb in linux
blastdb blastall
updated 4.5 years ago by ★ 30k • written 4.5 years ago by ▴ 280
0
votes
0
replies
674
views
Creating phylogenetic trees for a full genome at once?
genomic Phylogeny
4.5 years ago by blur ▴ 280
0
votes
0
replies
725
views
Measuring diffeences in specific OUTs instead of full smaples in quiime2
OTU quiime2
4.6 years ago by blur ▴ 280
2
votes
4
replies
3.5k
views
Where can I find a fasta for mitochondrial genes?
mitochondrial genes
updated 4.6 years ago by 14k • written 4.6 years ago by ▴ 280
0
votes
0
replies
2.7k
views
Answer: A: HTSeq counts gives zero when I can see the reads in the BAM file
4.7 years ago by blur ▴ 280
2
votes
4
replies
2.7k
views
HTSeq counts gives zero when I can see the reads in the BAM file
htseq htseq-counts
4.7 years ago by blur ▴ 280
0
votes
0
replies
740
views
mitochondrial tRNA secondary stracture / model fold
trnas mitochondria stracture
4.7 years ago by blur ▴ 280
0
votes
0
replies
736
views
exomePeak for non-fragmented libraries
exomePeak
4.7 years ago by blur ▴ 280
0
votes
0
replies
6.0k
views
Comment: C: bowtie2 --un vs --un-conc
4.8 years ago by blur ▴ 280
4
votes
2
replies
6.0k
views
bowtie2 --un vs --un-conc
bowtie2
updated 4.8 years ago by 9.0k • written 4.8 years ago by ▴ 280
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