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0
votes
0
replies
285
views
Can checkM do automatic genus identification?
checkM
5 months ago by blur ▴ 280
0
votes
7
replies
1.7k
views
Snippy does not find SNPs I know are present
snippy-multi snippy snps
updated 8 months ago by 55k • written 8 months ago by ▴ 280
0
votes
1
reply
1.7k
views
Comment: Comment: Snippy does not find SNPs I know are present
updated 8 months ago by 152k • written 8 months ago by ▴ 280
0
votes
1
reply
1.7k
views
Comment: Comment: Snippy does not find SNPs I know are present
updated 8 months ago by 152k • written 8 months ago by ▴ 280
0
votes
1
reply
1.7k
views
Comment: Comment: Snippy does not find SNPs I know are present
8 months ago by blur ▴ 280
0
votes
0
replies
632
views
Comment: Comment: What tool is best to build plasmid using a reference sequence?
10 months ago by blur ▴ 280
2
votes
2
replies
632
views
What tool is best to build plasmid using a reference sequence?
assembly reference WGS
10 months ago by blur ▴ 280
0
votes
0
replies
271
views
Problem evaluating chewBBACA schema
schema chewBBACA
11 months ago by blur ▴ 280
1
vote
1
reply
463
views
best tools for bacterial wgMLST
wgMLST
updated 11 months ago by ★ 1.6k • written 11 months ago by ▴ 280
0
votes
0
replies
311
views
Is there a good tool/reference for PBP and porin analysis
PBP porin
15 months ago by blur ▴ 280
2
votes
1
reply
1.4k
views
snippy error
snippy
updated 16 months ago by ★ 1.1k • written 16 months ago by ▴ 280
0
votes
0
replies
563
views
Minimum spanning tree based on cgMLST allelic profiles
cgMLST spanning Minimum tree
20 months ago by blur ▴ 280
0
votes
1
reply
549
views
Is there a capsule typing tool for pseudomonas? (Like KAPTIVE for Kelbsiella)
pseudomonas capsule kaptive
updated 22 months ago by 152k • written 22 months ago by ▴ 280
0
votes
0
replies
430
views
Where can I find a adegenet tutorial/workshop for beginners?
minimum-spanning-tree adegenet
updated 23 months ago by 45k • written 23 months ago by ▴ 280
0
votes
0
replies
857
views
Comment: Comment: Visualizing several genomes/plasmids in a single figure
2.0 years ago by blur ▴ 280
0
votes
2
replies
857
views
Visualizing several genomes/plasmids in a single figure
visualization
2.0 years ago by blur ▴ 280
3
votes
2
replies
1.4k
views
Metadata for assemblies deposited in NCBI
ncbi metadata assembly
updated 2.3 years ago by ▴ 800 • written 2.3 years ago by ▴ 280
0
votes
1
reply
1.6k
views
Comment: Comment: Predicting protein fold using known stracture
2.4 years ago by blur ▴ 280
2
votes
6
replies
1.6k
views
Predicting protein fold using known stracture
protein modeller prediction 3D
updated 2.4 years ago by 55k • written 2.4 years ago by ▴ 280
1
vote
1
reply
749
views
Where can I get a fasta reference for all mob/rep genes?
mob plasmids rep
updated 2.5 years ago by ▴ 60 • written 2.5 years ago by ▴ 280
0
votes
0
replies
544
views
snp-dists numbers don't add up
snp snp-dists
2.6 years ago by blur ▴ 280
1
vote
1
reply
858
views
What is the best tool/wrokflow for a core SNP alignment?
Gubbins snp-sites SNP-detector snippy SNP
updated 2.7 years ago by 55k • written 2.7 years ago by ▴ 280
0
votes
0
replies
1.2k
views
Comment: Comment: How do I download all genomes with specific ST type from ncbi
2.7 years ago by blur ▴ 280
4
votes
3
replies
1.2k
views
How do I download all genomes with specific ST type from ncbi
ncbi
2.7 years ago by blur ▴ 280
0
votes
0
replies
1.4k
views
Comment: Comment: setting overlap in DADA2 in qiime2
2.9 years ago by blur ▴ 280
0
votes
2
replies
1.4k
views
setting overlap in DADA2 in qiime2
dada2 qiime qiime2
2.9 years ago by blur ▴ 280
0
votes
1
reply
2.4k
views
Comment: Comment: ANI for inter-species analysis and genome tree phylogeny
3.5 years ago by blur ▴ 280
0
votes
2
replies
2.4k
views
Comment: Comment: ANI for inter-species analysis and genome tree phylogeny
3.5 years ago by blur ▴ 280
0
votes
6
replies
2.4k
views
ANI for inter-species analysis and genome tree phylogeny
ANI Identity Nucleotide Average
updated 3.5 years ago by 11k • written 3.5 years ago by ▴ 280
0
votes
0
replies
515
views
Can you use easyFig to visualize a single genome?
easyfig
3.5 years ago by blur ▴ 280
0
votes
0
replies
781
views
Problem aligning ggtree circular tree labels to right angles
fan circular ggtree
3.7 years ago by blur ▴ 280
1
vote
1
reply
10k
views
Comment: Comment: Can't locate Bio/SeqIO.pm - path error?
3.8 years ago by blur ▴ 280
6
votes
4
replies
10k
views
Can't locate Bio/SeqIO.pm - path error?
bioperl
updated 22 months ago by ▴ 180 • written 3.8 years ago by ▴ 280
0
votes
0
replies
1.3k
views
Comment: Comment: Bioinformatic tool for acinetobacter plasmids
3.9 years ago by blur ▴ 280
1
vote
2
replies
1.3k
views
Bioinformatic tool for acinetobacter plasmids
plasmidseeker plasmidfinder plasmid
3.9 years ago by blur ▴ 280
1
vote
0
replies
1.2k
views
QIIME2 quality control
control dada2 quality qiime2
4.0 years ago by blur ▴ 280
0
votes
0
replies
2.7k
views
Comment: Comment: PROKKA annotation problem - wrong reference?
4.1 years ago by blur ▴ 280
0
votes
1
reply
2.7k
views
Comment: Comment: PROKKA annotation problem - wrong reference?
4.1 years ago by blur ▴ 280
2
votes
4
replies
2.7k
views
PROKKA annotation problem - wrong reference?
prokka annotation
4.1 years ago by blur ▴ 280
2
votes
2
replies
1.3k
views
Problem setting blastdb in linux
blastdb blastall
updated 4.1 years ago by ★ 29k • written 4.1 years ago by ▴ 280
0
votes
0
replies
592
views
Creating phylogenetic trees for a full genome at once?
genomic Phylogeny
4.2 years ago by blur ▴ 280
0
votes
0
replies
615
views
Measuring diffeences in specific OUTs instead of full smaples in quiime2
OTU quiime2
4.2 years ago by blur ▴ 280
2
votes
4
replies
2.7k
views
Where can I find a fasta for mitochondrial genes?
mitochondrial genes
updated 4.2 years ago by 14k • written 4.2 years ago by ▴ 280
2
votes
4
replies
2.4k
views
HTSeq counts gives zero when I can see the reads in the BAM file
htseq htseq-counts
4.3 years ago by blur ▴ 280
0
votes
0
replies
2.4k
views
Answer: A: HTSeq counts gives zero when I can see the reads in the BAM file
4.3 years ago by blur ▴ 280
0
votes
0
replies
644
views
mitochondrial tRNA secondary stracture / model fold
trnas mitochondria stracture
4.3 years ago by blur ▴ 280
0
votes
0
replies
636
views
exomePeak for non-fragmented libraries
exomePeak
4.3 years ago by blur ▴ 280
0
votes
0
replies
5.3k
views
Comment: C: bowtie2 --un vs --un-conc
4.4 years ago by blur ▴ 280
4
votes
2
replies
5.3k
views
bowtie2 --un vs --un-conc
bowtie2
updated 4.4 years ago by 9.0k • written 4.4 years ago by ▴ 280
0
votes
0
replies
2.1k
views
Comment: C: how Creat un-aligne file with bowtie?
4.4 years ago by blur ▴ 280
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