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comments
0
votes
0
replies
117
views
Is there a good tool/reference for PBP and porin analysis
PBP
porin
28 days ago by
blur
▴ 280
1
vote
1
reply
513
views
snippy error
snippy
updated 10 weeks ago by
cfos4698
★ 1.1k • written 12 weeks ago by
blur
▴ 280
0
votes
0
replies
265
views
Minimum spanning tree based on cgMLST allelic profiles
cgMLST
spanning
Minimum
tree
6 months ago by
blur
▴ 280
0
votes
1
reply
284
views
Is there a capsule typing tool for pseudomonas? (Like KAPTIVE for Kelbsiella)
pseudomonas
capsule
kaptive
updated 8 months ago by
GenoMax
141k • written 8 months ago by
blur
▴ 280
0
votes
0
replies
254
views
Where can I find a adegenet tutorial/workshop for beginners?
minimum-spanning-tree
adegenet
updated 9 months ago by
Ram
43k • written 9 months ago by
blur
▴ 280
0
votes
0
replies
499
views
Comment:
Comment: Visualizing several genomes/plasmids in a single figure
10 months ago by
blur
▴ 280
0
votes
2
replies
499
views
Visualizing several genomes/plasmids in a single figure
visualization
10 months ago by
blur
▴ 280
2
votes
2
replies
832
views
Metadata for assemblies deposited in NCBI
ncbi
metadata
assembly
updated 13 months ago by
MirianT_NCBI
▴ 720 • written 13 months ago by
blur
▴ 280
0
votes
1
reply
1000
views
Comment:
Comment: Predicting protein fold using known stracture
15 months ago by
blur
▴ 280
2
votes
6
replies
1000
views
Predicting protein fold using known stracture
protein
modeller
prediction
3D
updated 15 months ago by
Michael
54k • written 15 months ago by
blur
▴ 280
1
vote
1
reply
475
views
Where can I get a fasta reference for all mob/rep genes?
mob
plasmids
rep
updated 16 months ago by
bas1993
▴ 60 • written 16 months ago by
blur
▴ 280
0
votes
0
replies
348
views
snp-dists numbers don't add up
snp
snp-dists
17 months ago by
blur
▴ 280
1
vote
1
reply
582
views
What is the best tool/wrokflow for a core SNP alignment?
Gubbins
snp-sites
SNP-detector
snippy
SNP
updated 18 months ago by
Michael
54k • written 18 months ago by
blur
▴ 280
0
votes
0
replies
639
views
Comment:
Comment: How do I download all genomes with specific ST type from ncbi
18 months ago by
blur
▴ 280
4
votes
3
replies
639
views
How do I download all genomes with specific ST type from ncbi
ncbi
18 months ago by
blur
▴ 280
0
votes
0
replies
997
views
Comment:
Comment: setting overlap in DADA2 in qiime2
21 months ago by
blur
▴ 280
0
votes
2
replies
997
views
setting overlap in DADA2 in qiime2
dada2
qiime
qiime2
21 months ago by
blur
▴ 280
0
votes
1
reply
1.5k
views
Comment:
Comment: ANI for inter-species analysis and genome tree phylogeny
2.3 years ago by
blur
▴ 280
0
votes
2
replies
1.5k
views
Comment:
Comment: ANI for inter-species analysis and genome tree phylogeny
2.3 years ago by
blur
▴ 280
0
votes
6
replies
1.5k
views
ANI for inter-species analysis and genome tree phylogeny
ANI
Identity
Nucleotide
Average
updated 2.3 years ago by
5heikki
11k • written 2.3 years ago by
blur
▴ 280
0
votes
0
replies
373
views
Can you use easyFig to visualize a single genome?
easyfig
2.4 years ago by
blur
▴ 280
0
votes
0
replies
549
views
Problem aligning ggtree circular tree labels to right angles
fan
circular
ggtree
2.5 years ago by
blur
▴ 280
1
vote
1
reply
6.9k
views
Comment:
Comment: Can't locate Bio/SeqIO.pm - path error?
2.6 years ago by
blur
▴ 280
6
votes
4
replies
6.9k
views
Can't locate Bio/SeqIO.pm - path error?
bioperl
updated 8 months ago by
schlogl
▴ 160 • written 2.6 years ago by
blur
▴ 280
0
votes
0
replies
932
views
Comment:
Comment: Bioinformatic tool for acinetobacter plasmids
2.8 years ago by
blur
▴ 280
1
vote
2
replies
932
views
Bioinformatic tool for acinetobacter plasmids
plasmidseeker
plasmidfinder
plasmid
2.8 years ago by
blur
▴ 280
1
vote
0
replies
877
views
QIIME2 quality control
control
dada2
quality
qiime2
2.8 years ago by
blur
▴ 280
0
votes
0
replies
1.8k
views
Comment:
Comment: PROKKA annotation problem - wrong reference?
2.9 years ago by
blur
▴ 280
0
votes
1
reply
1.8k
views
Comment:
Comment: PROKKA annotation problem - wrong reference?
2.9 years ago by
blur
▴ 280
2
votes
4
replies
1.8k
views
PROKKA annotation problem - wrong reference?
prokka
annotation
2.9 years ago by
blur
▴ 280
2
votes
2
replies
889
views
Problem setting blastdb in linux
blastdb
blastall
updated 2.9 years ago by
Mensur Dlakic
★ 27k • written 2.9 years ago by
blur
▴ 280
0
votes
0
replies
443
views
Creating phylogenetic trees for a full genome at once?
genomic
Phylogeny
3.0 years ago by
blur
▴ 280
0
votes
0
replies
446
views
Measuring diffeences in specific OUTs instead of full smaples in quiime2
OTU
quiime2
3.0 years ago by
blur
▴ 280
2
votes
4
replies
1.9k
views
Where can I find a fasta for mitochondrial genes?
mitochondrial
genes
updated 3.1 years ago by
Jorge Amigo
14k • written 3.1 years ago by
blur
▴ 280
0
votes
0
replies
1.7k
views
Answer:
A: HTSeq counts gives zero when I can see the reads in the BAM file
3.1 years ago by
blur
▴ 280
2
votes
4
replies
1.7k
views
HTSeq counts gives zero when I can see the reads in the BAM file
htseq
htseq-counts
3.1 years ago by
blur
▴ 280
0
votes
0
replies
492
views
mitochondrial tRNA secondary stracture / model fold
trnas
mitochondria
stracture
3.2 years ago by
blur
▴ 280
0
votes
0
replies
485
views
exomePeak for non-fragmented libraries
exomePeak
3.2 years ago by
blur
▴ 280
0
votes
0
replies
3.8k
views
Comment:
C: bowtie2 --un vs --un-conc
3.2 years ago by
blur
▴ 280
2
votes
2
replies
3.8k
views
bowtie2 --un vs --un-conc
bowtie2
updated 3.2 years ago by
Carlo Yague
8.7k • written 3.2 years ago by
blur
▴ 280
0
votes
0
replies
1.5k
views
Comment:
C: how Creat un-aligne file with bowtie?
3.2 years ago by
blur
▴ 280
0
votes
1
reply
1.7k
views
Comment:
C: Riboseq - pairs unaligned to rRNA get mixed up
3.2 years ago by
blur
▴ 280
0
votes
1
reply
1.7k
views
Comment:
C: Riboseq - pairs unaligned to rRNA get mixed up
3.2 years ago by
blur
▴ 280
0
votes
0
replies
1.7k
views
Comment:
C: Riboseq - pairs unaligned to rRNA get mixed up
3.2 years ago by
blur
▴ 280
1
vote
7
replies
1.7k
views
Riboseq - pairs unaligned to rRNA get mixed up
riboseq
bwa
3.2 years ago by
blur
▴ 280
0
votes
11
replies
1.6k
views
No coverage in macs2 peak summit!
macs2
peaks
updated 3.3 years ago by
Biostar
20 • written 3.4 years ago by
blur
▴ 280
0
votes
0
replies
558
views
TopHat2 --prefilter-multihits option gives supp. alignments?
tophat2
--prefilter-multihits
3.3 years ago by
blur
▴ 280
0
votes
0
replies
1.6k
views
Comment:
C: No coverage in macs2 peak summit!
3.4 years ago by
blur
▴ 280
0
votes
0
replies
1.6k
views
Comment:
C: No coverage in macs2 peak summit!
3.4 years ago by
blur
▴ 280
0
votes
0
replies
1.6k
views
Comment:
C: No coverage in macs2 peak summit!
3.4 years ago by
blur
▴ 280
206 results • Page
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