User: magda
magda • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Portugal
- Last seen:
- 2 years ago
- Joined:
- 4 years, 6 months ago
- Email:
- m********@gmail.com
Posts by magda
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... I want to merge my variant data with those from the 1000 genomes project, but which genotype can I assume that the 1000 Genomes project individuals have in the positions that are not included in their vcf files.
Should I assume that they are homozygous for the reference allele? But what if in that p ...
written 2.1 years ago by
magda • 20
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... Hi,
I got public data from galaxy that is in gd_genotype format, however I want to convert it to plink or .vcf format, and don't find any tool to do this.
Galaxy can convert from .vcf, etc to gd_snp or gd_genotype format, but not the other way round.
Do you know some way to do this?
Thank you,
...
written 2.4 years ago by
magda • 20
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... Thank you!, it has worked! :)
...
written 4.5 years ago by
magda • 20
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... Where can I find the rs ids of SNPs on the the Affymetrix Human Immune and inflammatory 9k SNP array?
I have looked in Affymetrix, in UCSC database, ensembl, and I just cannot find it.
Thank you
...
written 4.5 years ago by
magda • 20
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