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2
votes
2
replies
3.6k
views
Sanger Imputation Service - The input file sanity check failed
bcftools
Imputation
VCF
Sanger
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
alesssia
▴ 580
1
vote
1
reply
5.9k
views
Answer:
Answer: Plink extract SNPs from .ped file using ID
updated 2.1 years ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
0
votes
0
replies
10k
views
Comment:
Comment: How to remove batch effect from RNA-seq data?
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
0
votes
1
reply
10k
views
Comment:
Comment: How to remove batch effect from RNA-seq data?
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
6
votes
4
replies
10k
views
How to remove batch effect from RNA-seq data?
combat
RNA-Seq
SVA
DEseq2
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
2
votes
0
replies
2.5k
views
Answer:
Answer: Which chromosome a gene belongs to, in human?
updated 24 months ago by
Ram
44k • written 9.4 years ago by
alesssia
▴ 580
1
vote
1
reply
53k
views
Comment:
C: PLINK: merge .bed files
9.4 years ago by
alesssia
▴ 580
0
votes
0
replies
3.1k
views
Comment:
Comment: Find LD blocks
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
4.3k
views
Comment:
Comment: Large tab-delimited table of SNP data, how to filter out some rows based on rsID
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
1
vote
0
replies
3.1k
views
Answer:
A: Find LD blocks
9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
2.7k
views
Comment:
C: Regions of the genome that may include CNVs
9.5 years ago by
alesssia
▴ 580
0
votes
1
reply
3.0k
views
Comment:
Comment: Creating snpmatrix object from a flat file
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
4.3k
views
Comment:
Comment: Need good way to run a Principle Component Analysis on SNP data
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
1
reply
2.7k
views
Comment:
C: Regions of the genome that may include CNVs
9.5 years ago by
alesssia
▴ 580
1
vote
4
replies
2.7k
views
Regions of the genome that may include CNVs
UCSC
CNV
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
9.7k
views
Comment:
Comment: Coding genotypes from nucleotides to 0/1/2 in R.
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
2
votes
2
replies
9.7k
views
Answer:
Answer: Coding genotypes from nucleotides to 0/1/2 in R.
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
1
vote
1
reply
9.7k
views
Comment:
Comment: Coding genotypes from nucleotides to 0/1/2 in R.
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
3.8k
views
Comment:
C: how to convert 012 data to ACTG data with plink?
9.5 years ago by
alesssia
▴ 580
0
votes
1
reply
3.8k
views
Answer:
Answer: how to convert 012 data to ACTG data with plink?
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
4
votes
1
reply
1.4k
views
Answer:
Answer: re-installation of R packages
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
6
votes
1
reply
15k
views
Answer:
Answer: R programming, concatenate or combine all the column contents
updated 2.5 years ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
2
votes
0
replies
1.9k
views
Comment:
Comment: Package for checking differential expression of gene
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
2
votes
1
reply
1.9k
views
Answer:
Answer: Package for checking differential expression of gene
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
1
reply
3.1k
views
Comment:
Comment: how to use dbSNP
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
2
replies
3.1k
views
Comment:
C: how to use dbSNP
9.5 years ago by
alesssia
▴ 580
2
votes
1
reply
3.1k
views
Answer:
Answer: how to use dbSNP
updated 23 months ago by
Ram
44k • written 9.5 years ago by
alesssia
▴ 580
0
votes
0
replies
2.6k
views
Comment:
Comment: Bio-informatic database for SNP-Blood pressure association
updated 22 months ago by
Ram
44k • written 9.6 years ago by
alesssia
▴ 580
2
votes
0
replies
4.9k
views
Answer:
Answer: Need advice: I want to display a heatmap of gene expression based on a dendrogra
updated 22 months ago by
Ram
44k • written 9.6 years ago by
alesssia
▴ 580
0
votes
0
replies
1.8k
views
Is it possible to extract the C component of the ACE model from an AE model?
GCTA
Mx
ACE
AE
twin
updated 22 months ago by
Ram
44k • written 9.6 years ago by
alesssia
▴ 580
0
votes
0
replies
5.2k
views
Comment:
C: PED & MAP file extension
9.6 years ago by
alesssia
▴ 580
0
votes
1
reply
5.2k
views
Comment:
Comment: PED & MAP file extension
updated 22 months ago by
Ram
44k • written 9.6 years ago by
alesssia
▴ 580
0
votes
0
replies
3.7k
views
Comment:
Comment: Starting up with PLINK
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
alesssia
▴ 580
0
votes
1
reply
2.3k
views
Comment:
C: Complex clustering of RNA-seq data
9.6 years ago by
alesssia
▴ 580
1
vote
1
reply
3.9k
views
Answer:
A: Get Gene Location Data
9.7 years ago by
alesssia
▴ 580
1
vote
1
reply
7.3k
views
Answer:
Answer: Retrieve a subset of SNPs in Plink
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
alesssia
▴ 580
0
votes
1
reply
2.0k
views
Answer:
Answer: how can one find novel drugs names?
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
alesssia
▴ 580
0
votes
1
reply
3.2k
views
Answer:
Answer: List of causal variants for autoimmune diseases
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
alesssia
▴ 580
1
vote
0
replies
4.6k
views
Answer:
Answer: R program (bioconductor)
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
0
replies
2.9k
views
DESeq2 - Normalisation factors
DESeq2
normalisation
RNA-Seq
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
0
replies
4.1k
views
Comment:
C: DESeq2: invalid class “GRangesList” object
9.8 years ago by
alesssia
▴ 580
0
votes
1
reply
4.1k
views
Comment:
C: DESeq2: invalid class “GRangesList” object
9.8 years ago by
alesssia
▴ 580
2
votes
7
replies
4.1k
views
DESeq2: invalid class “GRangesList” object
DESeq2
bioconductor
r
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
1
reply
4.1k
views
Comment:
Comment: DESeq2: invalid class “GRangesList” object
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
0
replies
3.5k
views
Comment:
C: RNA-Seq: using GLMM to detect differentially expressed genes
9.8 years ago by
alesssia
▴ 580
4
votes
2
replies
3.5k
views
RNA-Seq: using GLMM to detect differentially expressed genes
GLMM
differential-expression
RNA-Seq
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
1
reply
2.8k
views
Comment:
Comment: DESeq2: can I correct for relatedness when using data from multiplex families?
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
0
votes
1
reply
2.8k
views
Comment:
Comment: DESeq2: can I correct for relatedness when using data from multiplex families?
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
alesssia
▴ 580
7
votes
13
replies
4.4k
views
DESeq2: can I correct for relatedness when using data from multiplex families?
DESeq2
RNA-Seq
Multiplex-families
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
alesssia
▴ 580
0
votes
0
replies
7.0k
views
Comment:
C: lmekin -- Model fails because of the Cholesky decomposition -- but chol works!
9.8 years ago by
alesssia
▴ 580
112 results • Page
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