User: alecloic

gravatar for alecloic
alecloic30
Reputation:
30
Status:
New User
Location:
France
Last seen:
1 year, 4 months ago
Joined:
2 years, 4 months ago
Email:
a*******@msn.com

Posts by alecloic

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Error with ALE (Assessing the Accuracy of Genome and Metagenome Assemblies)
... Your solution works, thank you! A. GUYOMARD ...
written 2.0 years ago by alecloic30
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Error with ALE (Assessing the Accuracy of Genome and Metagenome Assemblies)
... hello, I am currently working on a de novo large genome assembly. now I want to assess the quality of my reconstructed genome. I saw that there are several suitable programs. I am trying to use ALE a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenom ...
alignment assembly next-gen ale evaluation written 2.1 years ago by alecloic30
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Comment: C: How can we have SAM / BAM reads to validate a de novo genome assembly?
... ok. thank you for your response. I was not sure that it was very logical and software do not mention this problem. So I'll probably do like that. ...
written 2.2 years ago by alecloic30
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How can we have SAM / BAM reads to validate a de novo genome assembly?
... hello, I am currently working on a de novo large genome assembly. now I want to assess the quality of my reconstructed genome. I saw that there are several suitable programs. Some require as input reads in the format BAM / SAM. For example, there are the software: - ALE: Assembly Likelihood Evalua ...
genome assembly validation denovo sam/bam written 2.2 years ago by alecloic30 • updated 2.2 years ago by Devon Ryan65k
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Comment: C: SOAPdenovo: what is the input file of the second step (the command "contig") ?
... it's good, it works. it was simple. I do not know why I tried to specify the input files in the second step. thank you for your help. ...
written 2.2 years ago by alecloic30
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SOAPdenovo: what is the input file of the second step (the command "contig") ?
... hello, I am currently working on a de novo large genome assembly. In this context I would like to use the Soapdenovo program that seems to be very effective. To verify that everything works fine, I chose to run the assembly process step by step. The first step is: ./SOAPdenovo-63mer sparse_pregr ...
genome assembly contig soapdenovo written 2.2 years ago by alecloic30
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Comment: C: How do I compile Quake (error correction of Miseq reads) in Ubuntu?
... OK thank you for your response. I just wrote a new relatively similar post. ...
written 2.2 years ago by alecloic30
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Comment: C: How do I compile Quake (error correction of Miseq reads) in Ubuntu?
... hello, Did you find a solution to your problem? because I am in the same situation and my attempts do not work. I think my problem while using QUAKE could come from there. cordially ...
written 2.2 years ago by alecloic30
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Problem to compile the Software Minia
... hello, I am currently working on a de novo large genome assembly. In this context I would like to use the Minia program that seems to be very effective. I try to install this program for several days, but it does not work. With "Minia 2.0.1 Linux 64 bit binaries",  I have the following error:: ...
assembly next-gen compile minia written 2.3 years ago by alecloic30 • updated 2.3 years ago by Rayan Chikhi1.1k
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Answer: A: Assembler for large genome de novo assembly with Illumina paired end reads of 15
... if it can be useful to someone, it seems that there are other interesting software for this case: JR-Assemble, Contrail and maybe Gossamer. ...
written 2.3 years ago by alecloic30

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