User: alecloic
alecloic • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- France
- Last seen:
- 2 years, 4 months ago
- Joined:
- 3 years, 4 months ago
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Posts by alecloic
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... Your solution works, thank you!
A. GUYOMARD
...
written 3.0 years ago by
alecloic • 40
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... hello,
I am currently working on a de novo large genome assembly. now I want to assess the quality of my reconstructed genome. I saw that there are several suitable programs. I am trying to use ALE a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenom ...
written 3.1 years ago by
alecloic • 40
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... ok. thank you for your response.
I was not sure that it was very logical and software do not mention this problem.
So I'll probably do like that.
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written 3.2 years ago by
alecloic • 40
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... hello,
I am currently working on a de novo large genome assembly. now I want to assess the quality of my reconstructed genome. I saw that there are several suitable programs. Some require as input reads in the format BAM / SAM. For example, there are the software:
- ALE: Assembly Likelihood Evalua ...
written 3.2 years ago by
alecloic • 40
• updated
3.2 years ago by
Devon Ryan ♦ 79k
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... it's good, it works. it was simple. I do not know why I tried to specify the input files in the second step.
thank you for your help.
...
written 3.2 years ago by
alecloic • 40
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... hello,
I am currently working on a de novo large genome assembly. In this context I would like to use the Soapdenovo program that seems to be very effective.
To verify that everything works fine, I chose to run the assembly process step by step. The first step is:
./SOAPdenovo-63mer sparse_pregr ...
written 3.2 years ago by
alecloic • 40
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... OK thank you for your response. I just wrote a new relatively similar post.
...
written 3.2 years ago by
alecloic • 40
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... hello,
Did you find a solution to your problem? because I am in the same situation and my attempts do not work. I think my problem while using QUAKE could come from there.
cordially
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written 3.2 years ago by
alecloic • 40
3
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... hello,
I am currently working on a de novo large genome assembly. In this context I would like to use the Minia program that seems to be very effective. I try to install this program for several days, but it does not work.
With "Minia 2.0.1 Linux 64 bit binaries", I have the following error::
...
written 3.3 years ago by
alecloic • 40
• updated
3.3 years ago by
Rayan Chikhi • 1.3k
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... if it can be useful to someone, it seems that there are other interesting software for this case: JR-Assemble, Contrail and maybe Gossamer.
...
written 3.3 years ago by
alecloic • 40
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For Assembler for large genome de novo assembly with Illumina paired end reads of 150 pb
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