User: alecloic
alecloic • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- France
- Last seen:
- 4 years, 6 months ago
- Joined:
- 5 years, 5 months ago
- Email:
- a*******@msn.com
Posts by alecloic
<prev
• 12 results •
page 1 of 2 •
next >
0
votes
1
answer
1.8k
views
1
answers
... Your solution works, thank you!
A. GUYOMARD
...
written 5.2 years ago by
alecloic • 40
2
votes
1
answer
1.8k
views
1
answer
... hello,
I am currently working on a de novo large genome assembly. now I want to assess the quality of my reconstructed genome. I saw that there are several suitable programs. I am trying to use ALE a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenom ...
written 5.2 years ago by
alecloic • 40
0
votes
1
answer
2.0k
views
1
answers
... ok. thank you for your response.
I was not sure that it was very logical and software do not mention this problem.
So I'll probably do like that.
...
written 5.3 years ago by
alecloic • 40
2
votes
1
answer
2.0k
views
1
answer
... hello,
I am currently working on a de novo large genome assembly. now I want to assess the quality of my reconstructed genome. I saw that there are several suitable programs. Some require as input reads in the format BAM / SAM. For example, there are the software:
- ALE: Assembly Likelihood Evalua ...
written 5.3 years ago by
alecloic • 40
• updated
5.3 years ago by
Devon Ryan ♦ 95k
0
votes
1
answer
2.0k
views
1
answers
... it's good, it works. it was simple. I do not know why I tried to specify the input files in the second step.
thank you for your help.
...
written 5.3 years ago by
alecloic • 40
1
vote
1
answer
2.0k
views
1
answer
... hello,
I am currently working on a de novo large genome assembly. In this context I would like to use the Soapdenovo program that seems to be very effective.
To verify that everything works fine, I chose to run the assembly process step by step. The first step is:
./SOAPdenovo-63mer sparse_pregr ...
written 5.3 years ago by
alecloic • 40
0
votes
2
answers
2.2k
views
2
answers
... OK thank you for your response. I just wrote a new relatively similar post.
...
written 5.4 years ago by
alecloic • 40
0
votes
2
answers
2.2k
views
2
answers
... hello,
Did you find a solution to your problem? because I am in the same situation and my attempts do not work. I think my problem while using QUAKE could come from there.
cordially
...
written 5.4 years ago by
alecloic • 40
3
votes
1
answer
1.9k
views
1
answer
... hello,
I am currently working on a de novo large genome assembly. In this context I would like to use the Minia program that seems to be very effective. I try to install this program for several days, but it does not work.
With "Minia 2.0.1 Linux 64 bit binaries", I have the following error::
...
written 5.4 years ago by
alecloic • 40
• updated
5.4 years ago by
Rayan Chikhi • 1.4k
0
votes
5
answers
5.6k
views
5
answers
... if it can be useful to someone, it seems that there are other interesting software for this case: JR-Assemble, Contrail and maybe Gossamer.
...
written 5.5 years ago by
alecloic • 40
Latest awards to alecloic
Popular Question
5.2 years ago,
created a question with more than 1,000 views.
For Assembler for large genome de novo assembly with Illumina paired end reads of 150 pb
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 913 users visited in the last hour