User: nikkitta.sa

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nikkitta.sa10
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United States
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4 years, 4 months ago
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Posts by nikkitta.sa

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Correlate gene expression data with mutations TCGA
... Thanks, I'll look into it.  ...
written 4.4 years ago by nikkitta.sa10
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Correlate gene expression data with mutations TCGA
... Hello,  I would like to correlate gene expression with mutations in breast invasive carcinoma.  I downloaded level 3 gene expression data from TCGA. Now, to take it one step further, what kind of data can I work with for drawing a correlation between up- or down- regulation of my gene of interest ...
tcga gene expression breast cancer mutations written 4.4 years ago by nikkitta.sa10 • updated 4.4 years ago by EagleEye6.4k
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Comment: C: TCGA level 3 gene expression dataset
... Thanks a lot. Appreciate it.  ...
written 4.4 years ago by nikkitta.sa10
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Comment: C: TCGA level 3 gene expression dataset
... Right. Thanks Devon.  I was trying to use grep -r "FBXL10" . > outfile.txt And i got the message -  grep: input file ‘./outfile.txt’ is also the output Why is that the case? the ' . ' would ask grep to go through all the subirectories and files to look for my gene of interest..Why would it co ...
written 4.4 years ago by nikkitta.sa10
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Comment: C: TCGA level 3 gene expression dataset
... Thanks Dario, I'll look into it.. ...
written 4.4 years ago by nikkitta.sa10
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Comment: C: TCGA level 3 gene expression dataset
... I'm looking at the whole dataset as opposed to single file and here's the part of my output on the console - ./US82800149_251976013065_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt:FBXL10    -0.985666666666667 ./US82800149_251976013053_S01_GE2_105_Dec08.txt_lmean.out.logratio.g ...
written 4.4 years ago by nikkitta.sa10
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Comment: C: TCGA level 3 gene expression dataset
... Thanks Devon, I tried grep.  Worked like a charm.  How do I write my results to a new file?  I used  grep -r "GeneName" . This gave me a list of FileName GeneName ExpressionValue Thanks again. I'm working on writing these results to a file for future use.     ...
written 4.4 years ago by nikkitta.sa10
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TCGA level 3 gene expression dataset
... Hello, I am looking at Breast cancer gene expression level 3 data on TCGA. I downloaded a dataset of 139 text files and sifted through some files manually to look for my gene of interest and its expression value. However, I haven't had any luck finding it so far.  I am thinking I ought to write a ...
level3 tcga breast cancer bulk data written 4.4 years ago by nikkitta.sa10 • updated 4.4 years ago by dario.garvan450

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