Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
427
views
Comment: Comment: Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
13 months ago by qwzhang0601 ▴ 70
1
vote
3
replies
427
views
Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
TCGA RNAseq
updated 13 months ago by 117k • written 13 months ago by ▴ 70
1
vote
2
replies
632
views
Download raw RNA-seq data from TCGA
TCGA RNA-seq
13 months ago by qwzhang0601 ▴ 70
0
votes
0
replies
632
views
Comment: Comment: Download raw RNA-seq data from TCGA
13 months ago by qwzhang0601 ▴ 70
0
votes
0
replies
434
views
Comment: C: Remove duplicate reads for bisulfite sequencing reads
17 months ago by qwzhang0601 ▴ 70
1
vote
2
replies
434
views
Remove duplicate reads for bisulfite sequencing reads
DNA methylation remove duplicates
updated 17 months ago by 117k • written 17 months ago by ▴ 70
0
votes
0
replies
519
views
Comment: C: TCGA raw RNA-Seq data
20 months ago by qwzhang0601 ▴ 70
0
votes
2
replies
519
views
TCGA raw RNA-Seq data
RNA-Seq TCGA
updated 20 months ago by 62k • written 20 months ago by ▴ 70
0
votes
2
replies
336
views
merge file according to IDs
sequencing
updated 20 months ago by 8.8k • written 20 months ago by ▴ 70
0
votes
2
replies
360
views
sum counts in regions in bed format
sequencing
20 months ago by qwzhang0601 ▴ 70
1
vote
1
reply
931
views
align reads to regions with similar sequences
alignment
updated 21 months ago by 20 • written 4.2 years ago by ▴ 70
0
votes
0
replies
387
views
RNA-Seq database across rodents
RNA-Seq gene expression
24 months ago by qwzhang0601 ▴ 70
7
votes
8
replies
6.0k
views
6 follow
Prepare gene families for CAFE
gene family CAFE
updated 2.6 years ago by ▴ 30 • written 5.3 years ago by ▴ 70
0
votes
2
replies
1.3k
views
alignment with phylogenetic tree
multiple sequence alignment phylogenetic tree
2.9 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
1.3k
views
Answer: A: alignment with phylogenetic tree
2.9 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
875
views
Comment: C: obstain 100-way alignment of 100 species for a certain gene
2.9 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
875
views
Comment: C: obstain 100-way alignment of 100 species for a certain gene
2.9 years ago by qwzhang0601 ▴ 70
3
votes
4
replies
875
views
obstain 100-way alignment of 100 species for a certain gene
100-way alignment multiple sequence alignment
2.9 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
975
views
Comment: C: Validate PCR DNA primers against whole de novel genome
3.3 years ago by qwzhang0601 ▴ 70
0
votes
1
reply
975
views
Comment: C: Validate PCR DNA primers against whole de novel genome
3.3 years ago by qwzhang0601 ▴ 70
1
vote
4
replies
975
views
Validate PCR DNA primers against whole de novel genome
primers in sillico
updated 3.3 years ago by ★ 1.8k • written 3.3 years ago by ▴ 70
12
votes
5
replies
8.4k
views
Repeatmasker, Can't locate Text/Soundex.pm
repeatMasker
updated 3.4 years ago by ▴ 70 • written 4.9 years ago by ▴ 70
0
votes
0
replies
706
views
Design paralog-specific primer for RT-PCR on de novel genome
qRT-PCR Primer
3.4 years ago by qwzhang0601 ▴ 70
1
vote
5
replies
1.6k
views
compare and merge VCF files
VCF genotype
written 3.6 years ago by ▴ 70
0
votes
0
replies
1.6k
views
Comment: C: compare and merge VCF files
3.6 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
1.6k
views
Comment: C: compare and merge VCF files
3.6 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
1.2k
views
Compare gene expression in two species
RNA-Seq
3.7 years ago by qwzhang0601 ▴ 70
0
votes
1
reply
2.3k
views
Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeatMasker repeats
updated 3.9 years ago by 8.1k • written 4.9 years ago by ▴ 70
0
votes
0
replies
895
views
is there a tool to visualize and compare gene structure of orthologs/paralogs?
visualization ortholog paralog
4.0 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
2.3k
views
Comment: C: read counts for RNA-seq analysis of repeat elements
4.2 years ago by qwzhang0601 ▴ 70
0
votes
3
replies
2.3k
views
read counts for RNA-seq analysis of repeat elements
RNA-Seq Repeats
4.2 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
3.9k
views
Comment: C: BUSCOs running time
4.3 years ago by qwzhang0601 ▴ 70
0
votes
2
replies
3.0k
views
install genewise (wise2.4.1) on linux
genewise
updated 4.4 years ago by ★ 2.8k • written 4.4 years ago by ▴ 70
0
votes
1
reply
1.8k
views
find pseudogenes for a new genome annotation
pseudogenes
4.6 years ago by qwzhang0601 ▴ 70
0
votes
3
replies
1.8k
views
choose the results using different parameters for CAFE3.0 (gene family expansion analysis)
CAFE gene family expansion gene family contraction
updated 4.6 years ago by ▴ 110 • written 4.7 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: choose the results using different parameters for CAFE3.0 (gene family expansion
4.6 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
1.3k
views
From phylogenetic tree to a time tree
RAxML
4.7 years ago by qwzhang0601 ▴ 70
1
vote
3
replies
2.1k
views
install augustus on MAC
AUGUSTUS
updated 4.8 years ago by 20 • written 5.4 years ago by ▴ 70
0
votes
1
reply
1.6k
views
InterProScan (v5) to get pathway annotation
InterProScan pathway GO
updated 4.8 years ago by ★ 7.1k • written 4.8 years ago by ▴ 70
1
vote
0
replies
2.0k
views
Comment: C: differences between "-title database_title" and "-out database_name" for "makebl
4.8 years ago by qwzhang0601 ▴ 70
6
votes
3
replies
2.0k
views
differences between "-title database_title" and "-out database_name" for "makeblastdb" of Blast
Blast makeblastdb
updated 4.8 years ago by 34k • written 4.8 years ago by ▴ 70
0
votes
1
reply
7.9k
views
Comment: C: List of species in RepeatMasker Tool (species parameter)
4.9 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
8.4k
views
Comment: C: Repeatmasker, Can't locate Text/Soundex.pm
4.9 years ago by qwzhang0601 ▴ 70
0
votes
1
reply
1.1k
views
Compare repeat elelemts among species
repeatmasker repeats
updated 4.9 years ago by 117k • written 4.9 years ago by ▴ 70
0
votes
3
replies
3.6k
views
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff Cufflink gffread
updated 5.1 years ago by • 0 • written 5.1 years ago by ▴ 70
0
votes
1
reply
2.8k
views
Comment: C: multiple alignment of multiple genes to generate a phylogenetic tree
5.2 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
2.8k
views
Comment: C: multiple alignment of multiple genes to generate a phylogenetic tree
5.2 years ago by qwzhang0601 ▴ 70
0
votes
5
replies
2.8k
views
multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree
updated 5.2 years ago by 20k • written 5.3 years ago by ▴ 70
0
votes
0
replies
1.3k
views
split genes in different scaffold or the same scaffold
genome annotation
5.3 years ago by qwzhang0601 ▴ 70
0
votes
0
replies
3.9k
views
Comment: C: BUSCOs running time
5.3 years ago by qwzhang0601 ▴ 70
84 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6