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Comment: Comment: Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
2.9 years ago by qwzhang0601 ▴ 80
1
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3
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Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
TCGA RNAseq
updated 2.9 years ago by 141k • written 2.9 years ago by ▴ 80
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1.1k
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Download raw RNA-seq data from TCGA
TCGA RNA-seq
2.9 years ago by qwzhang0601 ▴ 80
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0
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1.1k
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Comment: Comment: Download raw RNA-seq data from TCGA
2.9 years ago by qwzhang0601 ▴ 80
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0
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844
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Comment: C: Remove duplicate reads for bisulfite sequencing reads
3.3 years ago by qwzhang0601 ▴ 80
1
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2
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844
views
Remove duplicate reads for bisulfite sequencing reads
DNA methylation remove duplicates
updated 3.3 years ago by 141k • written 3.3 years ago by ▴ 80
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0
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882
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Comment: C: TCGA raw RNA-Seq data
3.5 years ago by qwzhang0601 ▴ 80
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2
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882
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TCGA raw RNA-Seq data
RNA-Seq TCGA
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 80
0
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2
replies
568
views
merge file according to IDs
sequencing
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 80
0
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2
replies
685
views
sum counts in regions in bed format
sequencing
3.5 years ago by qwzhang0601 ▴ 80
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1
reply
1.2k
views
align reads to regions with similar sequences
alignment
updated 3.6 years ago by 20 • written 6.0 years ago by ▴ 80
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0
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576
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RNA-Seq database across rodents
RNA-Seq gene expression
3.8 years ago by qwzhang0601 ▴ 80
10
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8
replies
7.8k
views
6 follow
Prepare gene families for CAFE
gene family CAFE
updated 4.4 years ago by ▴ 30 • written 7.2 years ago by ▴ 80
0
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2
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1.7k
views
alignment with phylogenetic tree
multiple-sequence-alignment phylogenetic-tree
updated 11 months ago by 43k • written 4.7 years ago by ▴ 80
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0
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1.7k
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Answer: A: alignment with phylogenetic tree
4.7 years ago by qwzhang0601 ▴ 80
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0
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1.4k
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Comment: C: obstain 100-way alignment of 100 species for a certain gene
4.7 years ago by qwzhang0601 ▴ 80
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0
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1.4k
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Comment: C: obstain 100-way alignment of 100 species for a certain gene
4.7 years ago by qwzhang0601 ▴ 80
3
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4
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1.4k
views
obstain 100-way alignment of 100 species for a certain gene
multiple-sequence-alignment 100-way-alignment
updated 11 months ago by 43k • written 4.7 years ago by ▴ 80
0
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0
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1.5k
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Comment: C: Validate PCR DNA primers against whole de novel genome
5.1 years ago by qwzhang0601 ▴ 80
0
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1
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1.5k
views
Comment: C: Validate PCR DNA primers against whole de novel genome
5.1 years ago by qwzhang0601 ▴ 80
1
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4
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1.5k
views
Validate PCR DNA primers against whole de novel genome
primers in sillico
updated 5.1 years ago by ★ 1.9k • written 5.1 years ago by ▴ 80
12
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5
replies
9.6k
views
Repeatmasker, Can't locate Text/Soundex.pm
repeatMasker
updated 5.2 years ago by ▴ 80 • written 6.7 years ago by ▴ 80
0
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0
replies
1.0k
views
Design paralog-specific primer for RT-PCR on de novel genome
qRT-PCR Primer
5.3 years ago by qwzhang0601 ▴ 80
1
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5
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2.3k
views
compare and merge VCF files
VCF genotype
written 5.4 years ago by ▴ 80
0
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0
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2.3k
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Comment: C: compare and merge VCF files
5.4 years ago by qwzhang0601 ▴ 80
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0
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2.3k
views
Comment: C: compare and merge VCF files
5.4 years ago by qwzhang0601 ▴ 80
0
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0
replies
1.5k
views
Compare gene expression in two species
RNA-Seq
5.6 years ago by qwzhang0601 ▴ 80
0
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1
reply
2.8k
views
Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeatMasker repeats
updated 5.7 years ago by 8.2k • written 6.7 years ago by ▴ 80
0
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0
replies
1.1k
views
is there a tool to visualize and compare gene structure of orthologs/paralogs?
visualization ortholog paralog
5.8 years ago by qwzhang0601 ▴ 80
0
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0
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2.7k
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Comment: C: read counts for RNA-seq analysis of repeat elements
6.1 years ago by qwzhang0601 ▴ 80
0
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3
replies
2.7k
views
read counts for RNA-seq analysis of repeat elements
RNA-Seq Repeats
6.1 years ago by qwzhang0601 ▴ 80
0
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0
replies
5.4k
views
Comment: C: BUSCOs running time
6.2 years ago by qwzhang0601 ▴ 80
0
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2
replies
3.8k
views
install genewise (wise2.4.1) on linux
genewise
updated 6.2 years ago by ★ 2.9k • written 6.2 years ago by ▴ 80
0
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1
reply
2.2k
views
find pseudogenes for a new genome annotation
pseudogenes
6.4 years ago by qwzhang0601 ▴ 80
0
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3
replies
2.2k
views
choose the results using different parameters for CAFE3.0 (gene family expansion analysis)
CAFE gene family expansion gene family contraction
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 80
0
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0
replies
2.2k
views
Comment: C: choose the results using different parameters for CAFE3.0 (gene family expansion
6.5 years ago by qwzhang0601 ▴ 80
0
votes
0
replies
1.6k
views
From phylogenetic tree to a time tree
RAxML
6.5 years ago by qwzhang0601 ▴ 80
1
vote
3
replies
2.7k
views
install augustus on MAC
AUGUSTUS
updated 6.6 years ago by 20 • written 7.3 years ago by ▴ 80
0
votes
1
reply
1.9k
views
InterProScan (v5) to get pathway annotation
InterProScan pathway GO
updated 6.6 years ago by 8.5k • written 6.6 years ago by ▴ 80
1
vote
0
replies
2.8k
views
Comment: C: differences between "-title database_title" and "-out database_name" for "makebl
6.7 years ago by qwzhang0601 ▴ 80
6
votes
3
replies
2.8k
views
differences between "-title database_title" and "-out database_name" for "makeblastdb" of Blast
Blast makeblastdb
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 80
0
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1
reply
11k
views
Comment: C: List of species in RepeatMasker Tool (species parameter)
6.7 years ago by qwzhang0601 ▴ 80
0
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0
replies
9.6k
views
Comment: C: Repeatmasker, Can't locate Text/Soundex.pm
6.7 years ago by qwzhang0601 ▴ 80
0
votes
1
reply
1.4k
views
Compare repeat elelemts among species
repeatmasker repeats
updated 6.7 years ago by 141k • written 6.7 years ago by ▴ 80
0
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3
replies
4.5k
views
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff Cufflink gffread
updated 6.9 years ago by • 0 • written 7.0 years ago by ▴ 80
0
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1
reply
3.5k
views
Comment: C: multiple alignment of multiple genes to generate a phylogenetic tree
7.1 years ago by qwzhang0601 ▴ 80
0
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0
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3.5k
views
Comment: C: multiple alignment of multiple genes to generate a phylogenetic tree
7.1 years ago by qwzhang0601 ▴ 80
0
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5
replies
3.5k
views
multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree
updated 7.1 years ago by 21k • written 7.1 years ago by ▴ 80
0
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0
replies
1.5k
views
split genes in different scaffold or the same scaffold
genome annotation
7.1 years ago by qwzhang0601 ▴ 80
0
votes
0
replies
5.4k
views
Comment: C: BUSCOs running time
7.1 years ago by qwzhang0601 ▴ 80
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