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0
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replies
1.1k
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Comment:
Comment: Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
3.4 years ago by
qwzhang0601
▴ 80
1
vote
3
replies
1.1k
views
Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
TCGA
RNAseq
updated 3.4 years ago by
GenoMax
146k • written 3.4 years ago by
qwzhang0601
▴ 80
1
vote
2
replies
1.2k
views
Download raw RNA-seq data from TCGA
TCGA
RNA-seq
3.4 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.2k
views
Comment:
Comment: Download raw RNA-seq data from TCGA
3.4 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
965
views
Comment:
C: Remove duplicate reads for bisulfite sequencing reads
3.7 years ago by
qwzhang0601
▴ 80
1
vote
2
replies
965
views
Remove duplicate reads for bisulfite sequencing reads
DNA methylation
remove duplicates
updated 3.7 years ago by
GenoMax
146k • written 3.7 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
966
views
Comment:
C: TCGA raw RNA-Seq data
3.9 years ago by
qwzhang0601
▴ 80
0
votes
2
replies
966
views
TCGA raw RNA-Seq data
RNA-Seq
TCGA
updated 3.9 years ago by
ATpoint
85k • written 3.9 years ago by
qwzhang0601
▴ 80
0
votes
2
replies
627
views
merge file according to IDs
sequencing
updated 4.0 years ago by
rpolicastro
13k • written 4.0 years ago by
qwzhang0601
▴ 80
0
votes
2
replies
768
views
sum counts in regions in bed format
sequencing
4.0 years ago by
qwzhang0601
▴ 80
1
vote
1
reply
1.3k
views
align reads to regions with similar sequences
alignment
updated 4.0 years ago by
Biostar
20 • written 6.5 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
634
views
RNA-Seq database across rodents
RNA-Seq
gene expression
4.3 years ago by
qwzhang0601
▴ 80
10
votes
8
replies
8.1k
views
6 follow
Prepare gene families for CAFE
gene family
CAFE
updated 4.8 years ago by
mayankkaashyap
▴ 30 • written 7.6 years ago by
qwzhang0601
▴ 80
0
votes
2
replies
1.7k
views
alignment with phylogenetic tree
multiple-sequence-alignment
phylogenetic-tree
updated 17 months ago by
Ram
44k • written 5.1 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.7k
views
Answer:
A: alignment with phylogenetic tree
5.1 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.6k
views
Comment:
C: obstain 100-way alignment of 100 species for a certain gene
5.2 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.6k
views
Comment:
C: obstain 100-way alignment of 100 species for a certain gene
5.2 years ago by
qwzhang0601
▴ 80
3
votes
4
replies
1.6k
views
obstain 100-way alignment of 100 species for a certain gene
multiple-sequence-alignment
100-way-alignment
updated 17 months ago by
Ram
44k • written 5.2 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.7k
views
Comment:
C: Validate PCR DNA primers against whole de novel genome
5.6 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
1.7k
views
Comment:
C: Validate PCR DNA primers against whole de novel genome
5.6 years ago by
qwzhang0601
▴ 80
1
vote
4
replies
1.7k
views
Validate PCR DNA primers against whole de novel genome
primers
in sillico
updated 5.6 years ago by
trausch
★ 1.9k • written 5.6 years ago by
qwzhang0601
▴ 80
12
votes
5
replies
9.8k
views
Repeatmasker, Can't locate Text/Soundex.pm
repeatMasker
updated 5.7 years ago by
virginia.s.markham
▴ 80 • written 7.1 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.1k
views
Design paralog-specific primer for RT-PCR on de novel genome
qRT-PCR
Primer
5.7 years ago by
qwzhang0601
▴ 80
1
vote
5
replies
2.4k
views
compare and merge VCF files
VCF
genotype
written 5.9 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
2.4k
views
Comment:
C: compare and merge VCF files
5.9 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
2.4k
views
Comment:
C: compare and merge VCF files
5.9 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.6k
views
Compare gene expression in two species
RNA-Seq
6.0 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
2.9k
views
Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeatMasker
repeats
updated 6.1 years ago by
Charles Warden
8.3k • written 7.2 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.1k
views
is there a tool to visualize and compare gene structure of orthologs/paralogs?
visualization
ortholog
paralog
6.2 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
2.8k
views
Comment:
C: read counts for RNA-seq analysis of repeat elements
6.5 years ago by
qwzhang0601
▴ 80
0
votes
3
replies
2.8k
views
read counts for RNA-seq analysis of repeat elements
RNA-Seq
Repeats
6.5 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
5.8k
views
Comment:
C: BUSCOs running time
6.6 years ago by
qwzhang0601
▴ 80
0
votes
2
replies
4.1k
views
install genewise (wise2.4.1) on linux
genewise
updated 6.7 years ago by
Charles Plessy
★ 2.9k • written 6.7 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
2.3k
views
find pseudogenes for a new genome annotation
pseudogenes
6.8 years ago by
qwzhang0601
▴ 80
0
votes
3
replies
2.3k
views
choose the results using different parameters for CAFE3.0 (gene family expansion analysis)
CAFE
gene family expansion
gene family contraction
updated 6.9 years ago by
Ben Fulton
▴ 150 • written 6.9 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
2.3k
views
Comment:
C: choose the results using different parameters for CAFE3.0 (gene family expansion
6.9 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.6k
views
From phylogenetic tree to a time tree
RAxML
7.0 years ago by
qwzhang0601
▴ 80
1
vote
3
replies
2.8k
views
install augustus on MAC
AUGUSTUS
updated 7.0 years ago by
Biostar
20 • written 7.7 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
1.9k
views
InterProScan (v5) to get pathway annotation
InterProScan
pathway
GO
updated 7.0 years ago by
Juke34
8.8k • written 7.1 years ago by
qwzhang0601
▴ 80
1
vote
0
replies
3.0k
views
Comment:
C: differences between "-title database_title" and "-out database_name" for "makebl
7.1 years ago by
qwzhang0601
▴ 80
6
votes
3
replies
3.0k
views
differences between "-title database_title" and "-out database_name" for "makeblastdb" of Blast
Blast
makeblastdb
updated 7.1 years ago by
h.mon
35k • written 7.1 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
11k
views
Comment:
C: List of species in RepeatMasker Tool (species parameter)
7.1 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
9.8k
views
Comment:
C: Repeatmasker, Can't locate Text/Soundex.pm
7.1 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
1.5k
views
Compare repeat elelemts among species
repeatmasker
repeats
updated 7.2 years ago by
GenoMax
146k • written 7.2 years ago by
qwzhang0601
▴ 80
0
votes
3
replies
4.6k
views
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff
Cufflink
gffread
updated 7.4 years ago by
elaak91
• 0 • written 7.4 years ago by
qwzhang0601
▴ 80
0
votes
1
reply
3.6k
views
Comment:
C: multiple alignment of multiple genes to generate a phylogenetic tree
7.5 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
3.6k
views
Comment:
C: multiple alignment of multiple genes to generate a phylogenetic tree
7.5 years ago by
qwzhang0601
▴ 80
0
votes
5
replies
3.6k
views
multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree
updated 7.5 years ago by
Joe
21k • written 7.5 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
1.6k
views
split genes in different scaffold or the same scaffold
genome annotation
7.5 years ago by
qwzhang0601
▴ 80
0
votes
0
replies
5.8k
views
Comment:
C: BUSCOs running time
7.6 years ago by
qwzhang0601
▴ 80
84 results • Page
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