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1.3k
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Comment: Comment: Admixture: "PLINK Input file error"
22 months ago by dec986 ▴ 370
1
vote
2
replies
1.3k
views
Admixture: "PLINK Input file error"
plink admixture
22 months ago by dec986 ▴ 370
2
votes
1
reply
1.1k
views
Bcftools equivalent of vcftools conversion to ped & map
bcftools
updated 23 months ago by 10k • written 23 months ago by ▴ 370
0
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1
reply
1.1k
views
Comment: Comment: Using admixture to estimate ancestry from a single VCF with no family informatio
24 months ago by dec986 ▴ 370
1
vote
3
replies
1.1k
views
Using admixture to estimate ancestry from a single VCF with no family information
admixture
updated 24 months ago by 2.8k • written 24 months ago by ▴ 370
0
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0
replies
1.2k
views
Comment: Comment: How to estimate race/ethnicity from VCF?
24 months ago by dec986 ▴ 370
0
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1
reply
1.2k
views
Comment: Comment: How to estimate race/ethnicity from VCF?
24 months ago by dec986 ▴ 370
1
vote
5
replies
1.2k
views
How to estimate race/ethnicity from VCF?
ethnicity
24 months ago by dec986 ▴ 370
0
votes
1
reply
4.7k
views
Comment: Comment: Calculating ethnicity of a sample VCF
24 months ago by dec986 ▴ 370
13
votes
8
replies
12k
views
7 follow
Building Dict File for GATK
java gatk
updated 10 months ago by ★ 4.3k • written 4.3 years ago by ▴ 370
0
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0
replies
671
views
Comment: Comment: DB SNP, how to download database?
2.1 years ago by dec986 ▴ 370
0
votes
2
replies
671
views
DB SNP, how to download database?
NIH
updated 13 months ago by 43k • written 2.1 years ago by ▴ 370
1
vote
20
replies
2.8k
views
7 follow
vcftools not ouputting log file when run from perl
vcftools vcf
updated 2.1 years ago by ▴ 670 • written 4.3 years ago by ▴ 370
0
votes
0
replies
366
views
download allele frequency database in build 37?
liftover
2.3 years ago by dec986 ▴ 370
0
votes
0
replies
483
views
statistical power calculation for array data
statistical calculations power
2.3 years ago by dec986 ▴ 370
0
votes
0
replies
438
views
Cutoffs for Proxy Identification: D' and R^2
plink2
2.6 years ago by dec986 ▴ 370
0
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0
replies
513
views
Starting GWAS with Plink
GWAS
2.7 years ago by dec986 ▴ 370
3
votes
3
replies
2.3k
views
How to connect HLA alleles with rsID?
rsid
updated 2.9 years ago by • 0 • written 3.0 years ago by ▴ 370
0
votes
1
reply
2.2k
views
Comment: C: Correct command line syntax for plink2
3.3 years ago by dec986 ▴ 370
0
votes
3
replies
2.2k
views
Correct command line syntax for plink2
plink2
updated 3.3 years ago by 10k • written 3.3 years ago by ▴ 370
0
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0
replies
5.2k
views
Answer: A: Differentially methylated regions: Easy & Fast Identification and ANnoTation
3.4 years ago by dec986 ▴ 370
6
votes
10
replies
5.2k
views
Tutorial: Differentially methylated regions: Easy & Fast Identification and ANnoTation
DMR dna-methylation
updated 13 months ago by 43k • written 6.1 years ago by ▴ 370
0
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1
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5.2k
views
Comment: C: Differentially methylated regions: Easy & Fast Identification and ANnoTation
3.4 years ago by dec986 ▴ 370
0
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1
reply
5.2k
views
Comment: C: Differentially methylated regions: Easy & Fast Identification and ANnoTation
3.4 years ago by dec986 ▴ 370
0
votes
1
reply
5.2k
views
Comment: C: Differentially methylated regions: Easy & Fast Identification and ANnoTation
3.4 years ago by dec986 ▴ 370
2
votes
0
replies
1.6k
views
Answer: A: vcftools not outputting any file, and not giving any error message
3.5 years ago by dec986 ▴ 370
2
votes
1
reply
1.6k
views
vcftools not outputting any file, and not giving any error message
vcftools
3.5 years ago by dec986 ▴ 370
2
votes
2
replies
1.1k
views
How to Interpret Chromosome Names from
genome
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 370
1
vote
1
reply
1.8k
views
conversion of VCF to M3VCF using Minimac
minimac
updated 3.5 years ago by ▴ 30 • written 3.6 years ago by ▴ 370
4
votes
5
replies
1.7k
views
how to add reference alleles to VCF?
vcf genome
updated 2.3 years ago by 43k • written 3.6 years ago by ▴ 370
0
votes
1
reply
869
views
how to split M3VCF by ID?
imputation
3.6 years ago by dec986 ▴ 370
3
votes
1
reply
1.6k
views
Plink altering VCF IDs
plink
updated 3.6 years ago by 10k • written 3.6 years ago by ▴ 370
0
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0
replies
1.7k
views
Comment: C: How to extract sample IDs from VCF into new VCF?
3.8 years ago by dec986 ▴ 370
2
votes
2
replies
1.7k
views
How to extract sample IDs from VCF into new VCF?
vcf
3.8 years ago by dec986 ▴ 370
1
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2
replies
1.6k
views
Comment: C: Can Plink 1.07 set-hh-missing output VCF?
3.8 years ago by dec986 ▴ 370
0
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0
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1.6k
views
Comment: C: Can Plink 1.07 set-hh-missing output VCF?
3.8 years ago by dec986 ▴ 370
6
votes
5
replies
1.6k
views
Can Plink 1.07 set-hh-missing output VCF?
plink
updated 3.8 years ago by 10k • written 3.8 years ago by ▴ 370
1
vote
1
reply
3.4k
views
Comment: C: Cannot find faToTwoBit download
3.8 years ago by dec986 ▴ 370
5
votes
3
replies
3.4k
views
Cannot find faToTwoBit download
fasta 2bit
updated 13 months ago by 43k • written 3.8 years ago by ▴ 370
0
votes
0
replies
734
views
How to create Survival Formula for Phenotype Data?
survival
3.9 years ago by dec986 ▴ 370
0
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0
replies
2.0k
views
Comment: C: bcftools cannot switch alt and ref alleles, IDs missing
4.2 years ago by dec986 ▴ 370
0
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1
reply
2.0k
views
Comment: C: bcftools cannot switch alt and ref alleles, IDs missing
4.2 years ago by dec986 ▴ 370
0
votes
4
replies
2.0k
views
bcftools cannot switch alt and ref alleles, IDs missing
bcftools vcf
4.2 years ago by dec986 ▴ 370
0
votes
0
replies
724
views
break_blocks & GATK switch REF & ALT alleles
vcf gatk
4.2 years ago by dec986 ▴ 370
0
votes
1
reply
1.3k
views
Break_blocks conversion of gvcf -> vcf
genome vcf
4.2 years ago by dec986 ▴ 370
6
votes
14
replies
3.1k
views
Alignment with STAR produces unique bam files, but identical output from bedtools multicov
bedtools STAR samtools
updated 4.2 years ago by 20 • written 8.0 years ago by ▴ 370
0
votes
1
reply
12k
views
Comment: C: Building Dict File for GATK
4.3 years ago by dec986 ▴ 370
1
vote
0
replies
1.1k
views
Comment: C: Break_blocks conversion of gvcf -> vcf
4.3 years ago by dec986 ▴ 370
0
votes
1
reply
1.1k
views
Comment: C: Break_blocks conversion of gvcf -> vcf
4.3 years ago by dec986 ▴ 370
1
vote
4
replies
1.1k
views
Break_blocks conversion of gvcf -> vcf
VCF
updated 4.3 years ago by 81k • written 4.3 years ago by ▴ 370
208 results • Page 2 of 5
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