User: Vincent Manzanilla
Vincent Manzanilla • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- Oslo
- Last seen:
- 1 week, 1 day ago
- Joined:
- 6 years, 1 month ago
- Email:
- v*****************@nhm.uio.no
Post Doc in biotech
Posts by Vincent Manzanilla
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... Thank you for the link!
The code for my problem was the following:
library(dplyr)
inner_join(df1,df2, by = c("ID" = "ID"))
ID A B D E
1 T 86 315 57 603
2 D 94 797 55 897
3 U 96 309 29 551
4 Z 18 397 79 409
5 W 8 168 65 243
6 C 63 353 33 191 ...
written 10 days ago by
Vincent Manzanilla • 30
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... Hi,
I would like to keep the line where the ID are the same. I know how to to it in bash nut I would like to succeed with R. I have two files with 500,000 lines and 300,000 lines.
df1 <- data.frame(ID=c(sample(LETTERS,20,replace=FALSE)),A=sample(1:100,20,replace=FALSE),B=sample(100:1 ...
written 12 days ago by
Vincent Manzanilla • 30
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... Thank you for your reply I think I found a way to mask the gap from the final fasta file.
The solution was posted in this [discussion][1] , however I grep the tag DP=0 to have the position without coverage (gap).
here the updated code
for i in $(cat list);
### Phasing alleles ###
...
written 3.7 years ago by
Vincent Manzanilla • 30
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... Hello
I have targeted enriched data from different plants that are, for some closely related and other a bit distant.
I have this idea to map then phase the alleles and call for the consensus for making matrices and at the end gene trees.
When I have a gap during the mapping, the phased alleles ...
written 3.7 years ago by
Vincent Manzanilla • 30
4
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5 follow
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... My dear nerd community,
We are sequencing many genomes of non-model plants today.
One of the first task is to separate the plastid, the mitochondrial and the nuclear genome. I was thinking there was general guidelines or even a consensus way to do it, but not really
I have to specify, in this cas ...
written 6.1 years ago by
Vincent Manzanilla • 30
• updated
6.1 years ago by
Brice Sarver • 3.6k
Latest awards to Vincent Manzanilla
Popular Question
3.6 years ago,
created a question with more than 1,000 views.
For How to separate plastid, mitochondrial, and nuclear genomes from whole genome sequencing data for plants?
Popular Question
5.1 years ago,
created a question with more than 1,000 views.
For How to separate plastid, mitochondrial, and nuclear genomes from whole genome sequencing data for plants?
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6.1 years ago,
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