User: shumaila.sayyab

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Posts by shumaila.sayyab

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Comment: C: Breakdancer output error
... Thankyou ernfrid, it worked after giving unique library names. ...
written 2.6 years ago by shumaila.sayyab0
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Comment: C: Breakdancer output error
... Thanks ernfrid, did this answer your question? please let me know if you have nay suggestion for the conf. file?? ...
written 2.6 years ago by shumaila.sayyab0
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Comment: C: Breakdancer output error
... I think Yes, each of my sample has two libraries (tight and wide), and when i run the script to generate the configuration file, i received this file (attached) readgroup:sample1_tight    platform:Illumina    map:../sample1_sample.dedup.bam    readlen:50.80    lib:tight    num:10001    lower:2298.0 ...
written 2.6 years ago by shumaila.sayyab0
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Breakdancer output error
... Hi everyone, I have 4 samples (matepair illumina) and run Breakdancer_max as follows: bam2cfg.pl -h -g -q 10 sample1.bam sample2.bam sample3.bam sample4.bam >sample1_2_sample3_4.cfg it worked without error msg. breakdancer-max -o chrX -q 10 -d Fastq_SVReadsFile_X -g GBrow ...
matepair ngs breakdancer strcutural variations written 2.6 years ago by shumaila.sayyab0 • updated 2.6 years ago by ernfrid180

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