User: shumaila.sayyab
shumaila.sayyab • 0
- Reputation:
- 0
- Status:
- New User
- Last seen:
- 5 months, 2 weeks ago
- Joined:
- 3 years, 2 months ago
- Email:
- s**************@gmail.com
Profile information, website and location are not shown for new users.
This helps us discourage the inappropriate use of our site.
Posts by shumaila.sayyab
<prev
• 6 results •
page 1 of 1 •
next >
0
votes
0
answers
312
views
0
answers
Comment:
C: sciClone input LOH
... perhaps, this may be the answer to what i was looking.. which i missed earlier
https://www.biostars.org/p/251007/ ...
written 6 months ago by
shumaila.sayyab • 0
1
vote
0
answers
312
views
0
answers
... Dear all,
I want to use sciclone on my somatic variant data. I am confused about the input it takes. One is the CNA information but incase of LOH input file, Is it cnLOH or LOH ? what i mean is looking at the results from ASCAT, should i give regions where we have major 2n and monir 0, or all the ...
written 7 months ago by
shumaila.sayyab • 0
0
votes
1
answer
1.1k
views
1
answers
Comment:
C: Breakdancer output error
... Thankyou ernfrid, it worked after giving unique library names.
...
written 3.2 years ago by
shumaila.sayyab • 0
0
votes
1
answer
1.1k
views
1
answers
Comment:
C: Breakdancer output error
... Thanks ernfrid, did this answer your question? please let me know if you have nay suggestion for the conf. file??
...
written 3.2 years ago by
shumaila.sayyab • 0
0
votes
1
answer
1.1k
views
1
answers
Comment:
C: Breakdancer output error
... I think Yes, each of my sample has two libraries (tight and wide), and when i run the script to generate the configuration file, i received this file (attached)
readgroup:sample1_tight platform:Illumina map:../sample1_sample.dedup.bam readlen:50.80 lib:tight num:10001 lower:2298.0 ...
written 3.2 years ago by
shumaila.sayyab • 0
2
votes
1
answer
1.1k
views
1
answer
...
Hi everyone,
I have 4 samples (matepair illumina) and run Breakdancer_max as follows:
bam2cfg.pl -h -g -q 10 sample1.bam sample2.bam sample3.bam sample4.bam >sample1_2_sample3_4.cfg
it worked without error msg.
breakdancer-max -o chrX -q 10 -d Fastq_SVReadsFile_X -g GBrow ...
written 3.2 years ago by
shumaila.sayyab • 0
• updated
3.2 years ago by
ernfrid • 190
Latest awards to shumaila.sayyab
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1597 users visited in the last hour